| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1984 |
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| Symbol | |
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| ID | 5612798 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2399804 |
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| End bp | 2400298 |
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| Gene Length | 495 bp |
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| Protein Length | 164 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932868 |
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| Product | ribonuclease activity regulator protein RraA |
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| Protein accession | YP_001473721 |
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| Protein GI | 157375121 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0684] Demethylmenaquinone methyltransferase |
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| TIGRFAM ID | [TIGR01935] RraA famliy |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0137329 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.331323 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATGACC TGTTACCCGA TTTATTTGAT CACTTTGCTG GTGAACTTTC GCTTTTATCC
GCTAAATTTA AACAGTATGG AAAGAGAGAG ATATTCTGGG GCGAAGTCGT CACGATTAAG
TGCTTTGAAG ATAATTCCAA AGTGAAGCAG ATACTGGCAA CGGAGGGGAA GGGGAAAGTG
CTCGTTGTCG ATGGTGATGC CTCCATGGAC AGGGCGCTCC TAGGTGATTT AATCACCTTA
AGTGCTGTGG ATAATGGCTG GGAAGGCGTT GTCATCAATG GTTGTGTCAG GGATGTGGGC
GCGCTTAAGA AGATGGACCT TGGTATTAAG GCTCTTGGTG CAAACCCGAT TAAGACGGTT
AAGCTCGATC AGGGAGAGGT CAATATTTCA CTCGAGATGG ACAGCGTTAT AATTGAGCCT
GGTATGATGC TATATTCGGA TGAAAATGGT ATCGCAATCG CCCCTAAGGC ATTAGATCTC
TCTTTCTTGT TATAA
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| Protein sequence | MNDLLPDLFD HFAGELSLLS AKFKQYGKRE IFWGEVVTIK CFEDNSKVKQ ILATEGKGKV
LVVDGDASMD RALLGDLITL SAVDNGWEGV VINGCVRDVG ALKKMDLGIK ALGANPIKTV
KLDQGEVNIS LEMDSVIIEP GMMLYSDENG IAIAPKALDL SFLL
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