More than 300 homologs were found in PanDaTox collection
for query gene Vapar_4760 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_4760  binding-protein-dependent transport systems inner membrane component  100 
 
 
267 aa  516  1.0000000000000001e-145  Variovorax paradoxus S110  Bacteria  normal  0.318809  n/a   
 
 
-
 
NC_007951  Bxe_A2015  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  68.92 
 
 
252 aa  319  1.9999999999999998e-86  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1263  ABC transporter permease  62.99 
 
 
262 aa  315  6e-85  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.165267 
 
 
-
 
NC_010172  Mext_1719  binding-protein-dependent transport systems inner membrane component  59.85 
 
 
264 aa  301  5.000000000000001e-81  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2038  binding-protein-dependent transport systems inner membrane component  59.07 
 
 
264 aa  299  3e-80  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.697058  normal  0.743835 
 
 
-
 
NC_010501  PputW619_2588  binding-protein-dependent transport systems inner membrane component  66.41 
 
 
267 aa  298  9e-80  Pseudomonas putida W619  Bacteria  normal  normal  0.417353 
 
 
-
 
NC_002947  PP_3210  ABC transporter, permease protein  65.65 
 
 
267 aa  296  3e-79  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1095  binding-protein-dependent transport systems inner membrane component  59.85 
 
 
264 aa  292  5e-78  Methylobacterium populi BJ001  Bacteria  normal  0.0240883  normal  0.166534 
 
 
-
 
NC_008312  Tery_1625  binding-protein-dependent transport systems inner membrane component  52.81 
 
 
285 aa  275  4e-73  Trichodesmium erythraeum IMS101  Bacteria  normal  0.0792607  normal  0.95709 
 
 
-
 
NC_007953  Bxe_C0801  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  51.67 
 
 
298 aa  271  8.000000000000001e-72  Burkholderia xenovorans LB400  Bacteria  normal  0.0745387  normal 
 
 
-
 
NC_007802  Jann_1473  binding-protein-dependent transport systems inner membrane component  51.95 
 
 
283 aa  263  3e-69  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3871  binding-protein-dependent transport systems inner membrane component  47.71 
 
 
280 aa  259  5.0000000000000005e-68  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.208081  n/a   
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  49.03 
 
 
268 aa  243  3e-63  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_012791  Vapar_5134  binding-protein-dependent transport systems inner membrane component  50.39 
 
 
294 aa  229  3e-59  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3552  ABC transporter membrane spanning protein  50 
 
 
285 aa  228  9e-59  Agrobacterium vitis S4  Bacteria  normal  0.0625026  n/a   
 
 
-
 
NC_011369  Rleg2_1676  binding-protein-dependent transport systems inner membrane component  50 
 
 
287 aa  227  1e-58  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00381914  normal 
 
 
-
 
NC_009952  Dshi_1382  binding-protein-dependent transport systems inner membrane component  48.48 
 
 
285 aa  225  6e-58  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.13305  normal 
 
 
-
 
NC_012848  Rleg_4665  binding-protein-dependent transport systems inner membrane component  48.03 
 
 
284 aa  224  1e-57  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.65192 
 
 
-
 
NC_011004  Rpal_0469  binding-protein-dependent transport systems inner membrane component  50 
 
 
274 aa  218  1e-55  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.858995  n/a   
 
 
-
 
NC_007406  Nwi_0333  binding-protein dependent transport system inner membrane protein  50 
 
 
278 aa  217  2e-55  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0427  binding-protein-dependent transport systems inner membrane component  49.23 
 
 
279 aa  216  2.9999999999999998e-55  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3414  ATP-binding protein of ABC transporter  50.61 
 
 
280 aa  216  2.9999999999999998e-55  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.24016 
 
 
-
 
NC_007958  RPD_0258  binding-protein-dependent transport systems inner membrane component  51.18 
 
 
274 aa  213  3.9999999999999995e-54  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.750925 
 
 
-
 
NC_008786  Veis_3145  binding-protein-dependent transport systems inner membrane component  52.77 
 
 
298 aa  209  3e-53  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.433007  normal  0.243208 
 
 
-
 
NC_009484  Acry_0832  binding-protein-dependent transport systems inner membrane component  49.12 
 
 
254 aa  203  3e-51  Acidiphilium cryptum JF-5  Bacteria  normal  0.404323  n/a   
 
 
-
 
NC_009485  BBta_7480  ABC transporter permease  50.21 
 
 
271 aa  202  4e-51  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.477102  normal  0.131238 
 
 
-
 
NC_007778  RPB_0572  binding-protein-dependent transport systems inner membrane component  51.46 
 
 
274 aa  202  5e-51  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0627389  normal  0.343483 
 
 
-
 
NC_011666  Msil_1164  binding-protein-dependent transport systems inner membrane component  55.41 
 
 
260 aa  196  3e-49  Methylocella silvestris BL2  Bacteria  n/a    normal  0.233018 
 
 
-
 
NC_007925  RPC_0572  binding-protein-dependent transport systems inner membrane component  47.86 
 
 
276 aa  195  7e-49  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  37.35 
 
 
277 aa  171  1e-41  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1091  binding-protein-dependent transport systems inner membrane component  49.17 
 
 
262 aa  169  3e-41  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  37.7 
 
 
257 aa  150  2e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2281  binding-protein-dependent transport systems inner membrane component  37.17 
 
 
281 aa  146  4.0000000000000006e-34  Frankia sp. EAN1pec  Bacteria  normal  0.695693  normal  0.331928 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  36.12 
 
 
254 aa  140  1.9999999999999998e-32  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  35.8 
 
 
259 aa  139  4.999999999999999e-32  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_012669  Bcav_3788  binding-protein-dependent transport systems inner membrane component  36.89 
 
 
317 aa  138  7e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0255815  normal 
 
 
-
 
NC_013521  Sked_17280  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  35.1 
 
 
325 aa  137  1e-31  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.158115  normal  0.544115 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  33.05 
 
 
257 aa  137  2e-31  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_010338  Caul_1260  binding-protein-dependent transport systems inner membrane component  42.42 
 
 
252 aa  135  6.0000000000000005e-31  Caulobacter sp. K31  Bacteria  normal  0.21476  normal  0.0147088 
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  33.86 
 
 
283 aa  134  1.9999999999999998e-30  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_013440  Hoch_2033  binding-protein-dependent transport systems inner membrane component  41.27 
 
 
275 aa  134  1.9999999999999998e-30  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0253714  normal  0.258175 
 
 
-
 
NC_013441  Gbro_0259  binding-protein-dependent transport systems inner membrane component  34.23 
 
 
453 aa  133  3.9999999999999996e-30  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3419  binding-protein-dependent transport systems inner membrane component  33.74 
 
 
258 aa  131  1.0000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.121812  n/a   
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  35.8 
 
 
277 aa  128  8.000000000000001e-29  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  30.25 
 
 
258 aa  127  2.0000000000000002e-28  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_013223  Dret_2296  binding-protein-dependent transport systems inner membrane component  34.55 
 
 
250 aa  126  3e-28  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6281  binding-protein-dependent transport systems inner membrane component  32.91 
 
 
256 aa  126  3e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.783663  normal 
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  37.61 
 
 
273 aa  126  3e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  34.36 
 
 
281 aa  127  3e-28  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  32.77 
 
 
254 aa  125  6e-28  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
274 aa  124  1e-27  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  32.8 
 
 
266 aa  123  3e-27  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012791  Vapar_0620  binding-protein-dependent transport systems inner membrane component  36.33 
 
 
258 aa  123  4e-27  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3166  ABC transporter, inner membrane subunit  36.8 
 
 
281 aa  122  5e-27  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
282 aa  122  5e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  30.95 
 
 
284 aa  122  6e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009050  Rsph17029_3904  binding-protein-dependent transport systems inner membrane component  36 
 
 
281 aa  122  8e-27  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2545  binding-protein-dependent transport system protein  32.02 
 
 
287 aa  121  9.999999999999999e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.240068  normal  0.521676 
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  38.05 
 
 
273 aa  121  9.999999999999999e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  32 
 
 
266 aa  120  1.9999999999999998e-26  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  36.17 
 
 
261 aa  120  1.9999999999999998e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_009654  Mmwyl1_2703  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
263 aa  120  1.9999999999999998e-26  Marinomonas sp. MWYL1  Bacteria  normal  0.88688  normal 
 
 
-
 
NC_008044  TM1040_1494  binding-protein-dependent transport systems inner membrane component  30 
 
 
281 aa  120  1.9999999999999998e-26  Ruegeria sp. TM1040  Bacteria  normal  0.58323  normal 
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  31.7 
 
 
270 aa  120  1.9999999999999998e-26  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  29.1 
 
 
268 aa  116  3e-25  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_009523  RoseRS_2763  binding-protein-dependent transport systems inner membrane component  34.74 
 
 
275 aa  116  3e-25  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1076  ABC transporter-like protein  33.19 
 
 
488 aa  116  5e-25  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.276573 
 
 
-
 
NC_014212  Mesil_2099  binding-protein-dependent transport systems inner membrane component  34.05 
 
 
306 aa  115  6e-25  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  31.25 
 
 
249 aa  113  2.0000000000000002e-24  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2389  binding-protein-dependent transport systems inner membrane component  35.85 
 
 
275 aa  114  2.0000000000000002e-24  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1091  binding-protein-dependent transport systems inner membrane component  27.89 
 
 
258 aa  113  3e-24  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0347556  normal 
 
 
-
 
NC_009832  Spro_3124  binding-protein-dependent transport systems inner membrane component  34.29 
 
 
255 aa  112  5e-24  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_2376  ABC transporter substrate binding inner membrane protein  32.28 
 
 
265 aa  112  5e-24  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3891  binding-protein-dependent transport systems inner membrane component  38.81 
 
 
300 aa  112  5e-24  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.000896674  normal  0.103005 
 
 
-
 
NC_008786  Veis_2127  binding-protein-dependent transport systems inner membrane component  30.13 
 
 
255 aa  112  7.000000000000001e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.427162 
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  30.2 
 
 
253 aa  112  7.000000000000001e-24  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1095  binding-protein-dependent transport systems inner membrane component  26.38 
 
 
255 aa  112  9e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010002  Daci_1140  binding-protein-dependent transport systems inner membrane component  27.62 
 
 
255 aa  111  9e-24  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  31.93 
 
 
259 aa  111  1.0000000000000001e-23  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_009664  Krad_3112  binding-protein-dependent transport systems inner membrane component  36.71 
 
 
253 aa  110  2.0000000000000002e-23  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0371548 
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  31.98 
 
 
308 aa  110  3e-23  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  33.61 
 
 
257 aa  110  3e-23  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3961  binding-protein-dependent transport systems inner membrane component  27.89 
 
 
256 aa  110  3e-23  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1308  binding-protein-dependent transport systems inner membrane component  34.5 
 
 
254 aa  109  4.0000000000000004e-23  Chloroflexus aggregans DSM 9485  Bacteria  normal  hitchhiker  0.0000169849 
 
 
-
 
NC_008148  Rxyl_3036  binding-protein-dependent transport systems inner membrane component  30.08 
 
 
266 aa  109  4.0000000000000004e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2046  binding-protein-dependent transport systems inner membrane component  30.12 
 
 
286 aa  109  5e-23  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0926  binding-protein-dependent transport systems inner membrane component  34.29 
 
 
249 aa  109  6e-23  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.04587  n/a   
 
 
-
 
NC_014212  Mesil_0817  ABC transporter related protein  36.99 
 
 
492 aa  108  6e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  0.309085  normal  0.730271 
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  28.88 
 
 
256 aa  108  6e-23  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1933  binding-protein-dependent transport systems inner membrane component  32.02 
 
 
255 aa  108  9.000000000000001e-23  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.323499  n/a   
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  34.36 
 
 
253 aa  108  1e-22  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_011989  Avi_3460  ABC transporter membrane spanning protein  27.73 
 
 
288 aa  108  1e-22  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1883  binding-protein-dependent transport systems inner membrane component  33.04 
 
 
322 aa  108  1e-22  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.167871 
 
 
-
 
NC_009636  Smed_2372  binding-protein-dependent transport systems inner membrane component  28.46 
 
 
289 aa  107  2e-22  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.239724 
 
 
-
 
NC_013739  Cwoe_2762  binding-protein-dependent transport systems inner membrane component  32.11 
 
 
250 aa  107  2e-22  Conexibacter woesei DSM 14684  Bacteria  normal  0.0247808  normal  0.0244453 
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  32.11 
 
 
281 aa  107  2e-22  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3562  binding-protein-dependent transport systems inner membrane component  36.59 
 
 
263 aa  106  3e-22  Opitutus terrae PB90-1  Bacteria  normal  0.120198  normal  0.916816 
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  31.32 
 
 
288 aa  107  3e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_009953  Sare_4268  binding-protein-dependent transport systems inner membrane component  32.51 
 
 
282 aa  106  4e-22  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0113678 
 
 
-
 
NC_007973  Rmet_0394  binding-protein-dependent transport systems inner membrane component  27.31 
 
 
259 aa  105  5e-22  Cupriavidus metallidurans CH34  Bacteria  normal  hitchhiker  0.00657833 
 
 
-
 
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