More than 300 homologs were found in PanDaTox collection
for query gene PCC7424_3970 on replicon NC_011729
Organism: Cyanothece sp. PCC 7424



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011729  PCC7424_3970  putative transcriptional regulator, Crp/Fnr family  100 
 
 
199 aa  405  1.0000000000000001e-112  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011726  PCC8801_0346  putative transcriptional regulator, Crp/Fnr family  67.34 
 
 
200 aa  267  8e-71  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0353  putative transcriptional regulator, Crp/Fnr family  67.84 
 
 
200 aa  267  8e-71  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2491  Crp/FNR family transcriptional regulator  43.32 
 
 
393 aa  171  5.999999999999999e-42  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.116073 
 
 
-
 
NC_007604  Synpcc7942_2356  Crp/FNR family transcriptional regulator  47.5 
 
 
208 aa  170  1e-41  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_0207  transcriptional regulator, Crp/Fnr family  48.66 
 
 
218 aa  165  4e-40  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.163925 
 
 
-
 
NC_007516  Syncc9605_1146  CRP/FNR family transcriptional regulator  40.66 
 
 
211 aa  156  2e-37  Synechococcus sp. CC9605  Bacteria  normal  0.242619  normal 
 
 
-
 
NC_014248  Aazo_2484  putative Crp/Fnr family transcriptional regulator  41.67 
 
 
389 aa  152  5e-36  'Nostoc azollae' 0708  Bacteria  normal  0.399715  n/a   
 
 
-
 
NC_011729  PCC7424_0437  putative transcriptional regulator, Crp/Fnr family with PAS/PAC sensor  39.89 
 
 
405 aa  122  2e-27  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008820  P9303_11071  putative transcriptional regulator, Crp/Fnr family protein  30.81 
 
 
233 aa  102  3e-21  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_011729  PCC7424_0372  transcriptional regulator, Crp/Fnr family  34.27 
 
 
225 aa  99.8  2e-20  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011726  PCC8801_2058  transcriptional regulator, Crp/Fnr family  34.27 
 
 
225 aa  99  4e-20  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_2082  transcriptional regulator, Crp/Fnr family  34.27 
 
 
225 aa  99  4e-20  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0463  Crp/FNR family transcriptional regulator  31.64 
 
 
197 aa  92.8  3e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  0.778777  normal  0.174596 
 
 
-
 
NC_007413  Ava_3283  Crp/FNR family transcriptional regulator  34.15 
 
 
223 aa  90.9  1e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_0127  Crp/FNR family transcriptional regulator  30 
 
 
222 aa  90.5  1e-17  Synechococcus elongatus PCC 7942  Bacteria  normal  0.867755  normal  0.325855 
 
 
-
 
NC_014248  Aazo_1065  Crp/Fnr family transcriptional regulator  34.15 
 
 
223 aa  90.1  2e-17  'Nostoc azollae' 0708  Bacteria  normal  0.547512  n/a   
 
 
-
 
NC_011884  Cyan7425_0755  transcriptional regulator, Crp/Fnr family  31.84 
 
 
223 aa  88.6  5e-17  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.125698 
 
 
-
 
NC_008312  Tery_2023  Crp/FNR family transcriptional regulator  32.32 
 
 
221 aa  86.7  2e-16  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0496812 
 
 
-
 
NC_007335  PMN2A_0435  regulatory protein, Crp  32.56 
 
 
210 aa  83.6  0.000000000000002  Prochlorococcus marinus str. NATL2A  Bacteria  normal  0.0427117  n/a   
 
 
-
 
NC_008820  P9303_24561  CRP family global nitrogen regulatory protein  33.14 
 
 
222 aa  83.2  0.000000000000002  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_008819  NATL1_11461  CRP/FNR family transcriptional regulator  33.81 
 
 
210 aa  82.8  0.000000000000003  Prochlorococcus marinus str. NATL1A  Bacteria  normal  hitchhiker  0.00962041 
 
 
-
 
NC_007513  Syncc9902_2075  Crp/FNR family transcriptional regulator  31.98 
 
 
210 aa  82.4  0.000000000000004  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_0990  putative Crp/Fnr family transcriptional regulator  32.7 
 
 
195 aa  82.4  0.000000000000005  'Nostoc azollae' 0708  Bacteria  normal  0.596823  n/a   
 
 
-
 
NC_007604  Synpcc7942_1684  CRP/FNR family transcriptional regulator  33.14 
 
 
206 aa  81.3  0.000000000000009  Synechococcus elongatus PCC 7942  Bacteria  normal  0.24693  normal  0.330754 
 
 
-
 
NC_011729  PCC7424_0115  putative transcriptional regulator, Crp/Fnr family  28.9 
 
 
225 aa  81.3  0.00000000000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.2299 
 
 
-
 
NC_009972  Haur_1291  CRP/FNR family transcriptional regulator  29.89 
 
 
305 aa  78.6  0.00000000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.06322  n/a   
 
 
-
 
NC_007516  Syncc9605_0269  Crp/FNR family transcriptional regulator  30.57 
 
 
238 aa  77.8  0.00000000000009  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_008819  NATL1_03241  CRP family global nitrogen regulatory protein  32.12 
 
 
243 aa  75.5  0.0000000000005  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal 
 
 
-
 
NC_007335  PMN2A_1612  Crp/FNR family transcriptional regulator  32.12 
 
 
243 aa  75.5  0.0000000000005  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_009091  P9301_02691  CRP family global nitrogen regulatory protein  32.12 
 
 
244 aa  73.9  0.000000000001  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3366  Crp/FNR family transcriptional regulator  31.61 
 
 
208 aa  73.2  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.698764  normal  0.804601 
 
 
-
 
NC_007577  PMT9312_0248  Crp/FNR family transcriptional regulator  30.81 
 
 
244 aa  73.6  0.000000000002  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_2174  CRP/FNR family transcriptional regulator  31.58 
 
 
209 aa  73.6  0.000000000002  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.576133 
 
 
-
 
NC_008816  A9601_02681  CRP family global nitrogen regulatory protein  32.12 
 
 
244 aa  73.2  0.000000000002  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.548193  n/a   
 
 
-
 
NC_007413  Ava_1750  Crp/FNR family transcriptional regulator  28.95 
 
 
239 aa  72.8  0.000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  0.499959  normal 
 
 
-
 
NC_008817  P9515_02791  CRP family global nitrogen regulatory protein  27.17 
 
 
244 aa  72.8  0.000000000003  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  0.696842  n/a   
 
 
-
 
NC_014248  Aazo_0140  putative Crp/Fnr family transcriptional regulator  28.95 
 
 
239 aa  72.8  0.000000000003  'Nostoc azollae' 0708  Bacteria  normal  0.0938698  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  30.61 
 
 
226 aa  72  0.000000000006  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_008312  Tery_3616  CRP/FNR family transcriptional regulator  32.21 
 
 
256 aa  71.2  0.000000000009  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0729234 
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  26.04 
 
 
247 aa  70.1  0.00000000002  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_2869  putative transcriptional regulator, Crp/Fnr family  32.52 
 
 
211 aa  70.1  0.00000000002  Cyanothece sp. PCC 7425  Bacteria  decreased coverage  0.00060408  normal  0.537416 
 
 
-
 
NC_008148  Rxyl_1234  Crp/FNR family transcriptional regulator  31.4 
 
 
232 aa  70.1  0.00000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  26.63 
 
 
236 aa  67.4  0.0000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  26.63 
 
 
236 aa  67.4  0.0000000001  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  29.21 
 
 
223 aa  65.9  0.0000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  28.65 
 
 
226 aa  65.5  0.0000000005  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  27.38 
 
 
226 aa  65.5  0.0000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  31.43 
 
 
222 aa  65.5  0.0000000005  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  28.11 
 
 
236 aa  65.1  0.0000000006  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  28.11 
 
 
236 aa  65.1  0.0000000007  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  26.78 
 
 
226 aa  64.3  0.000000001  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1376  CRP/FNR family transcriptional regulator  33.01 
 
 
228 aa  63.9  0.000000002  Thermoanaerobacter sp. X514  Bacteria  normal  0.271211  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  27.98 
 
 
226 aa  62.8  0.000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  28.12 
 
 
242 aa  63.2  0.000000003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_011757  Mchl_3673  transcriptional regulator, Crp/Fnr family  30.46 
 
 
254 aa  62.4  0.000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.43296  normal 
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  27.89 
 
 
235 aa  62.8  0.000000004  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_010172  Mext_3348  cyclic nucleotide-binding  30.46 
 
 
254 aa  62  0.000000005  Methylobacterium extorquens PA1  Bacteria  normal  0.181039  normal 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  28.34 
 
 
231 aa  61.6  0.000000006  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  27.03 
 
 
227 aa  61.6  0.000000006  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  27.33 
 
 
225 aa  61.6  0.000000006  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3227  CRP/FNR family transcriptional regulator  23.53 
 
 
232 aa  61.6  0.000000007  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  35.58 
 
 
234 aa  61.6  0.000000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  29.35 
 
 
227 aa  61.6  0.000000008  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  23.86 
 
 
236 aa  61.2  0.000000008  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  25.83 
 
 
232 aa  61.2  0.000000009  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_014212  Mesil_2484  transcriptional regulator, Crp/Fnr family  27.95 
 
 
202 aa  60.8  0.00000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.235796 
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  25 
 
 
236 aa  60.8  0.00000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_008261  CPF_1250  Crp/FNR family transcriptional regulator  23.86 
 
 
236 aa  61.2  0.00000001  Clostridium perfringens ATCC 13124  Bacteria  normal  0.403908  n/a   
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  27.17 
 
 
248 aa  60.5  0.00000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  33.15 
 
 
229 aa  60.5  0.00000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  27.06 
 
 
236 aa  60.5  0.00000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  26.38 
 
 
240 aa  60.1  0.00000002  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  28.49 
 
 
267 aa  60.1  0.00000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  27.17 
 
 
248 aa  60.5  0.00000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_008312  Tery_4941  CRP/FNR family transcriptional regulator  63.64 
 
 
45 aa  60.5  0.00000002  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  32.39 
 
 
251 aa  60.1  0.00000002  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  30.06 
 
 
229 aa  59.7  0.00000003  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  34.69 
 
 
225 aa  59.7  0.00000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  35.29 
 
 
225 aa  59.7  0.00000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  27.98 
 
 
225 aa  59.7  0.00000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0291  Crp/FNR family transcriptional regulator  39.81 
 
 
227 aa  59.7  0.00000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.277011  normal 
 
 
-
 
NC_013216  Dtox_2928  transcriptional regulator, Crp/Fnr family  28.49 
 
 
232 aa  58.9  0.00000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.39759 
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  26.09 
 
 
254 aa  59.3  0.00000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4187  transcriptional regulator, Crp/Fnr family  29.17 
 
 
254 aa  58.9  0.00000005  Methylobacterium populi BJ001  Bacteria  normal  0.338954  normal 
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  30.46 
 
 
235 aa  58.9  0.00000005  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  34.31 
 
 
220 aa  58.9  0.00000005  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  24.46 
 
 
236 aa  58.9  0.00000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  26.63 
 
 
248 aa  58.5  0.00000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_009976  P9211_02711  global nitrogen regulatory protein  29.33 
 
 
244 aa  57.8  0.0000001  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  27.49 
 
 
219 aa  57.8  0.0000001  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  24.12 
 
 
247 aa  57.8  0.0000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  25.6 
 
 
228 aa  57.8  0.0000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  28.75 
 
 
238 aa  57.4  0.0000001  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  26.59 
 
 
242 aa  56.6  0.0000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  26.59 
 
 
226 aa  57  0.0000002  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  27.65 
 
 
224 aa  57  0.0000002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_2547  Crp/FNR family transcriptional regulator  23.08 
 
 
246 aa  57  0.0000002  Ruegeria sp. TM1040  Bacteria  normal  0.389339  normal  0.365128 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  26.99 
 
 
227 aa  56.6  0.0000003  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  25 
 
 
225 aa  56.2  0.0000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
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