More than 300 homologs were found in PanDaTox collection
for query gene Cpin_6102 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_6102  two component transcriptional regulator, LytTR family  100 
 
 
252 aa  506  9.999999999999999e-143  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3229  LytTR family two component transcriptional regulator  49.6 
 
 
250 aa  268  4e-71  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0804  two component transcriptional regulator, LytTR family  48 
 
 
251 aa  253  2.0000000000000002e-66  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2789  response regulator receiver  39.61 
 
 
254 aa  207  1e-52  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2091  two component transcriptional regulator, LytTR family  41.47 
 
 
259 aa  207  2e-52  Spirosoma linguale DSM 74  Bacteria  normal  0.0504817  normal  0.478744 
 
 
-
 
NC_013132  Cpin_0307  two component transcriptional regulator, LytTR family  39.37 
 
 
250 aa  200  1.9999999999999998e-50  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_12408  two-component system response regulator  40.32 
 
 
251 aa  198  6e-50  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.401855  n/a   
 
 
-
 
NC_013132  Cpin_5824  two component transcriptional regulator, LytTR family  38.43 
 
 
258 aa  196  3e-49  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0489181 
 
 
-
 
NC_013037  Dfer_1317  two component transcriptional regulator, LytTR family  38.7 
 
 
261 aa  193  2e-48  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2868  two component transcriptional regulator, LytTR family  41.7 
 
 
259 aa  193  3e-48  Spirosoma linguale DSM 74  Bacteria  normal  0.0154807  normal 
 
 
-
 
NC_013037  Dfer_2354  two component transcriptional regulator, LytTR family  41.7 
 
 
256 aa  191  9e-48  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5312  two component transcriptional regulator, LytTR family  39.45 
 
 
255 aa  190  2e-47  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.0977362 
 
 
-
 
NC_009441  Fjoh_4908  LytTR family two component transcriptional regulator  40.62 
 
 
255 aa  189  2.9999999999999997e-47  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0271  two component transcriptional regulator, LytTR family  37.98 
 
 
256 aa  187  1e-46  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2661  two component transcriptional regulator, LytTR family  36.51 
 
 
252 aa  184  1.0000000000000001e-45  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_2256  two component transcriptional regulator, LytTR family  37.26 
 
 
262 aa  181  1e-44  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.596319 
 
 
-
 
NC_013730  Slin_2775  two component transcriptional regulator, LytTR family  39.15 
 
 
258 aa  180  2e-44  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0758  two component transcriptional regulator, LytTR family  36.47 
 
 
256 aa  180  2e-44  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.649382 
 
 
-
 
NC_013730  Slin_1794  two component transcriptional regulator, LytTR family  37.31 
 
 
260 aa  179  2.9999999999999997e-44  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_2439  LytTr DNA-binding region  36.11 
 
 
255 aa  176  3e-43  Pedobacter heparinus DSM 2366  Bacteria  normal  0.697869  normal 
 
 
-
 
NC_013132  Cpin_6060  two component transcriptional regulator, LytTR family  35.02 
 
 
253 aa  174  1.9999999999999998e-42  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_1836  two component transcriptional regulator, LytTR family  37.88 
 
 
258 aa  165  5.9999999999999996e-40  Spirosoma linguale DSM 74  Bacteria  normal  0.367672  normal  0.467017 
 
 
-
 
NC_013037  Dfer_1475  two component transcriptional regulator, LytTR family  35 
 
 
255 aa  164  1.0000000000000001e-39  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.059663 
 
 
-
 
NC_013037  Dfer_0600  two component transcriptional regulator, LytTR family  34.2 
 
 
265 aa  164  1.0000000000000001e-39  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.315052 
 
 
-
 
NC_013037  Dfer_1444  two component transcriptional regulator, LytTR family  35 
 
 
256 aa  164  2.0000000000000002e-39  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.317386 
 
 
-
 
NC_013132  Cpin_6676  two component transcriptional regulator, LytTR family  34.66 
 
 
253 aa  163  3e-39  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4001  LytTR family two component transcriptional regulator  33.07 
 
 
255 aa  162  7e-39  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_7151  two component transcriptional regulator, LytTR family  33.86 
 
 
249 aa  156  3e-37  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5335  two component transcriptional regulator, LytTR family  34.39 
 
 
253 aa  155  8e-37  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.709567 
 
 
-
 
NC_013037  Dfer_5405  two component transcriptional regulator, LytTR family  32.68 
 
 
243 aa  154  1e-36  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.379459 
 
 
-
 
NC_013037  Dfer_0800  two component transcriptional regulator, LytTR family  36.68 
 
 
251 aa  150  1e-35  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4674  LytTR family two component transcriptional regulator  33.85 
 
 
254 aa  147  2.0000000000000003e-34  Flavobacterium johnsoniae UW101  Bacteria  normal  0.124147  n/a   
 
 
-
 
NC_013730  Slin_3726  two component transcriptional regulator, LytTR family  33.46 
 
 
252 aa  144  1e-33  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.304835 
 
 
-
 
NC_013132  Cpin_6406  two component transcriptional regulator, LytTR family  34.52 
 
 
252 aa  144  1e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1209  LytTr DNA-binding region  30.71 
 
 
240 aa  123  4e-27  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0837  response regulator receiver protein  45.76 
 
 
153 aa  117  1.9999999999999998e-25  Spirosoma linguale DSM 74  Bacteria  normal  0.925678  normal 
 
 
-
 
NC_009483  Gura_2443  LytTR family two component transcriptional regulator  30.65 
 
 
279 aa  114  2.0000000000000002e-24  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0374  two component transcriptional regulator, LytTR family  30.4 
 
 
242 aa  107  2e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5142  two component transcriptional regulator, LytTR family  28.8 
 
 
244 aa  107  3e-22  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.546377  normal 
 
 
-
 
NC_008009  Acid345_0420  LytR/AlgR family transcriptional regulator  28.87 
 
 
317 aa  103  3e-21  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.0328897  normal  0.0302219 
 
 
-
 
NC_013501  Rmar_1860  two component transcriptional regulator, LytTR family  32.94 
 
 
266 aa  102  6e-21  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1246  LytTR family two component transcriptional regulator  32.59 
 
 
254 aa  102  6e-21  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_2172  LytR/AlgR family transcriptional regulator  30.12 
 
 
252 aa  101  1e-20  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0721488  normal  0.0255714 
 
 
-
 
NC_013501  Rmar_2186  two component transcriptional regulator, LytTR family  28.47 
 
 
275 aa  99.8  4e-20  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4801  two component transcriptional regulator, LytTR family  31.86 
 
 
240 aa  99  7e-20  Haliangium ochraceum DSM 14365  Bacteria  normal  0.154299  normal 
 
 
-
 
NC_013132  Cpin_5734  two component transcriptional regulator, LytTR family  32.74 
 
 
257 aa  98.2  1e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013203  Apar_1323  two component transcriptional regulator, LytTR family  28.79 
 
 
237 aa  98.2  1e-19  Atopobium parvulum DSM 20469  Bacteria  normal  0.0540721  normal  0.0273831 
 
 
-
 
NC_013061  Phep_1542  LytTr DNA-binding region  28.69 
 
 
245 aa  97.4  2e-19  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.300206 
 
 
-
 
NC_008009  Acid345_1001  LytR/AlgR family transcriptional regulator  28.57 
 
 
262 aa  97.4  2e-19  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.0103069 
 
 
-
 
NC_013170  Ccur_01160  response regulator of the LytR/AlgR family  30.74 
 
 
238 aa  96.3  4e-19  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_0137  two component transcriptional regulator, LytTR family  29.43 
 
 
237 aa  95.9  6e-19  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_0227  LytR/AlgR family transcriptional regulator  30.38 
 
 
265 aa  95.5  7e-19  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.312706  n/a   
 
 
-
 
NC_011138  MADE_01918  putative response regulator in two-component regulatory system  28.73 
 
 
275 aa  95.1  9e-19  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.159199  n/a   
 
 
-
 
NC_010571  Oter_0067  LytTR family two component transcriptional regulator  31.09 
 
 
268 aa  95.1  9e-19  Opitutus terrae PB90-1  Bacteria  normal  0.169577  normal  0.169612 
 
 
-
 
NC_013132  Cpin_6623  two component transcriptional regulator, LytTR family  28.08 
 
 
258 aa  95.1  9e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0991065  normal  0.080317 
 
 
-
 
NC_013037  Dfer_4386  two component transcriptional regulator, LytTR family  32.98 
 
 
260 aa  94.4  1e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3976  LytTR family two component transcriptional regulator  29.91 
 
 
247 aa  94.7  1e-18  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_0480  response regulator receiver domain-containing protein  28.36 
 
 
265 aa  93.6  2e-18  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1004  two component transcriptional regulator, LytTR family  30.47 
 
 
257 aa  94  2e-18  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00878343  normal  0.279198 
 
 
-
 
NC_013730  Slin_2906  two component transcriptional regulator, LytTR family  28.35 
 
 
245 aa  93.2  3e-18  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_2356  response regulator receiver protein  26.85 
 
 
257 aa  93.6  3e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  0.325932  normal  0.149931 
 
 
-
 
NC_010571  Oter_0979  LytTR family two component transcriptional regulator  29.87 
 
 
242 aa  93.6  3e-18  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0238694 
 
 
-
 
NC_013132  Cpin_2656  two component transcriptional regulator, LytTR family  27.71 
 
 
250 aa  92.8  5e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.81917  normal 
 
 
-
 
NC_013385  Adeg_1761  two component transcriptional regulator, LytTR family  28.24 
 
 
251 aa  92.4  6e-18  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5950  two component transcriptional regulator, LytTR family  30.56 
 
 
253 aa  92.4  6e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.792388  normal  0.0587504 
 
 
-
 
NC_013037  Dfer_0858  response regulator receiver protein  45.63 
 
 
141 aa  92  7e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.748894  normal 
 
 
-
 
NC_013165  Shel_00400  response regulator of the LytR/AlgR family  28.91 
 
 
237 aa  92  8e-18  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.132657  normal 
 
 
-
 
NC_007650  BTH_II1400  response regulator  31.5 
 
 
243 aa  91.7  1e-17  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_3773  two component transcriptional regulator, LytTR family  28.24 
 
 
260 aa  91.3  1e-17  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.10961  normal 
 
 
-
 
NC_013037  Dfer_1279  two component transcriptional regulator, LytTR family  28.24 
 
 
248 aa  91.3  1e-17  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.111911  normal  0.254446 
 
 
-
 
NC_013173  Dbac_2397  two component transcriptional regulator, LytTR family  24.82 
 
 
261 aa  90.1  3e-17  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_4495  LytTR family two component transcriptional regulator  29.41 
 
 
245 aa  89.4  5e-17  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.17015 
 
 
-
 
NC_011071  Smal_0617  two component transcriptional regulator, LytTR family  28.97 
 
 
243 aa  89  7e-17  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.23864 
 
 
-
 
NC_007435  BURPS1710b_A2603  response regulator  30.43 
 
 
243 aa  87.8  1e-16  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C6684  LytR/AlgR family transcriptional regulator  29.64 
 
 
243 aa  87.8  1e-16  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2697  LytR/AlgR family transcriptional regulator  27.45 
 
 
240 aa  88.2  1e-16  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0036  LytR/AlgR family transcriptional regulator  30.47 
 
 
248 aa  87.8  1e-16  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1381  LytR/AlgR family transcriptional regulator  27.84 
 
 
273 aa  88.2  1e-16  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.557466 
 
 
-
 
NC_010506  Swoo_4846  LytTR family two component transcriptional regulator  26.19 
 
 
246 aa  87  2e-16  Shewanella woodyi ATCC 51908  Bacteria  normal  0.568582  normal 
 
 
-
 
NC_013132  Cpin_0671  two component transcriptional regulator, LytTR family  32.29 
 
 
251 aa  86.7  3e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0031  response regulator receiver protein  29.46 
 
 
243 aa  86.7  3e-16  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1527  LytTR family two component transcriptional regulator  28.02 
 
 
246 aa  86.3  4e-16  Opitutus terrae PB90-1  Bacteria  normal  0.109257  normal 
 
 
-
 
NC_013385  Adeg_0898  two component transcriptional regulator, LytTR family  27.95 
 
 
265 aa  86.3  4e-16  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3487  LytR/AlgR family transcriptional regulator  27.84 
 
 
253 aa  85.9  5e-16  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.76921  normal 
 
 
-
 
NC_013730  Slin_6582  two component transcriptional regulator, LytTR family  26.67 
 
 
250 aa  85.9  5e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3341  putative two-component response-regulatory protein YehT  29.46 
 
 
244 aa  86.3  5e-16  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.798853 
 
 
-
 
NC_013061  Phep_3159  response regulator receiver  26.51 
 
 
242 aa  85.9  6e-16  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6586  two component transcriptional regulator, LytTR family  27.94 
 
 
246 aa  85.5  8e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.318104  normal 
 
 
-
 
NC_008786  Veis_2282  response regulator receiver protein  27.17 
 
 
276 aa  85.5  8e-16  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.81  normal 
 
 
-
 
NC_010424  Daud_0469  response regulator receiver protein  28.12 
 
 
254 aa  85.5  8e-16  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0387  response regulator  27.97 
 
 
261 aa  85.1  9e-16  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000974  response regulator of the LytR/AlgR family  29.01 
 
 
263 aa  84.7  0.000000000000001  Vibrio sp. Ex25  Bacteria  normal  0.728867  n/a   
 
 
-
 
NC_007519  Dde_0161  LytR/AlgR family transcriptional regulator  25.27 
 
 
270 aa  84.7  0.000000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_07024  transcriptional regulator  30.04 
 
 
263 aa  84.7  0.000000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007969  Pcryo_0097  LytR/AlgR family transcriptional regulator  30.62 
 
 
245 aa  84.7  0.000000000000001  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3544  two component transcriptional regulator, LytTR family  27.64 
 
 
251 aa  84.7  0.000000000000001  Geobacter lovleyi SZ  Bacteria  normal  0.0394969  n/a   
 
 
-
 
NC_010571  Oter_2329  LytTR family two component transcriptional regulator  28.81 
 
 
255 aa  84.3  0.000000000000002  Opitutus terrae PB90-1  Bacteria  normal  0.0531557  decreased coverage  0.00207881 
 
 
-
 
NC_011830  Dhaf_0495  response regulator receiver and SARP domain protein  36.44 
 
 
365 aa  84.3  0.000000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000000000108458  n/a   
 
 
-
 
NC_011992  Dtpsy_1069  two component transcriptional regulator, LytTR family  28.99 
 
 
276 aa  84  0.000000000000002  Acidovorax ebreus TPSY  Bacteria  normal  0.257927  n/a   
 
 
-
 
NC_007925  RPC_1083  putative two-component response-regulatory protein YehT  27.17 
 
 
239 aa  84  0.000000000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.450563  normal 
 
 
-
 
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