More than 300 homologs were found in PanDaTox collection
for query gene Saro_3782 on replicon NC_009427
Organism: Novosphingobium aromaticivorans DSM 12444



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009427  Saro_3782  response regulator receiver protein  100 
 
 
110 aa  220  6e-57  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4715  two component LuxR family transcriptional regulator  51.81 
 
 
196 aa  91.3  4e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1673  two component transcriptional regulator, LuxR family  48.28 
 
 
201 aa  88.2  3e-17  Ralstonia pickettii 12J  Bacteria  normal  0.619826  normal 
 
 
-
 
NC_010682  Rpic_2943  two component transcriptional regulator, LuxR family  48.28 
 
 
201 aa  88.2  3e-17  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010683  Rpic_4984  two component transcriptional regulator, LuxR family  48.28 
 
 
201 aa  88.2  4e-17  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0145131 
 
 
-
 
NC_012856  Rpic12D_2528  two component transcriptional regulator, LuxR family  48.28 
 
 
201 aa  88.2  4e-17  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0341229 
 
 
-
 
NC_008687  Pden_3311  response regulator receiver protein  48.78 
 
 
321 aa  81.6  0.000000000000003  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.479786 
 
 
-
 
NC_009668  Oant_2873  two component LuxR family transcriptional regulator  45.12 
 
 
216 aa  78.6  0.00000000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5323  transcriptional regulator two component heavy metal regulatory response ZniR  48.19 
 
 
206 aa  77.4  0.00000000000006  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.844748 
 
 
-
 
NC_009485  BBta_1549  LuxR transcriptional regulator  40.91 
 
 
201 aa  72.8  0.000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.355184  normal  0.152747 
 
 
-
 
NC_010571  Oter_0804  two component LuxR family transcriptional regulator  43.37 
 
 
204 aa  68.2  0.00000000003  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_1426  response regulator receiver protein  38.3 
 
 
118 aa  68.2  0.00000000003  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008817  P9515_18081  two-component response regulator  42.68 
 
 
248 aa  68.6  0.00000000003  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1562  response regulator receiver Signal transduction histidine kinase  40.96 
 
 
369 aa  66.2  0.0000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.847548  normal  0.236297 
 
 
-
 
NC_007512  Plut_0891  response regulator receiver domain-containing protein  42.65 
 
 
137 aa  66.2  0.0000000001  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1554  two component transcriptional regulator, winged helix family  39.02 
 
 
229 aa  66.2  0.0000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.00709514 
 
 
-
 
NC_014248  Aazo_5066  response regulator receiver modulated diguanylate cyclase  34.48 
 
 
338 aa  65.5  0.0000000002  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3276  winged helix family two component transcriptional regulator  44.19 
 
 
234 aa  65.1  0.0000000003  Thermobispora bispora DSM 43833  Bacteria  normal  0.208422  normal  0.192837 
 
 
-
 
NC_013422  Hneap_1587  two component transcriptional regulator, LuxR family  33.33 
 
 
292 aa  65.5  0.0000000003  Halothiobacillus neapolitanus c2  Bacteria  normal  0.522901  n/a   
 
 
-
 
NC_011369  Rleg2_2336  response regulator receiver protein  39.02 
 
 
133 aa  65.1  0.0000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.103968  normal  0.760096 
 
 
-
 
NC_008816  A9601_18291  two-component response regulator  39.76 
 
 
248 aa  65.5  0.0000000003  Prochlorococcus marinus str. AS9601  Bacteria  normal  0.276613  n/a   
 
 
-
 
NC_011831  Cagg_3071  response regulator receiver protein  43.75 
 
 
304 aa  64.7  0.0000000004  Chloroflexus aggregans DSM 9485  Bacteria  unclonable  0.000000348024  unclonable  0.0000000210343 
 
 
-
 
NC_013173  Dbac_1807  response regulator receiver protein  43.48 
 
 
139 aa  64.7  0.0000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0080  response regulator receiver modulated metal dependent phosphohydrolase  39.76 
 
 
357 aa  64.3  0.0000000005  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8879  response regulator receiver protein  43.9 
 
 
235 aa  64.3  0.0000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.103439  normal 
 
 
-
 
NC_009091  P9301_18111  two-component response regulator  38.55 
 
 
248 aa  64.3  0.0000000005  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_5086  response regulator receiver modulated diguanylate cyclase  34.44 
 
 
465 aa  64.3  0.0000000005  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009654  Mmwyl1_1086  response regulator receiver modulated metal dependent phosphohydrolase  39.29 
 
 
331 aa  64.3  0.0000000005  Marinomonas sp. MWYL1  Bacteria  normal  0.226857  hitchhiker  0.0000000112469 
 
 
-
 
NC_014248  Aazo_2887  LuxR family two component transcriptional regulator  39.02 
 
 
225 aa  63.9  0.0000000006  'Nostoc azollae' 0708  Bacteria  normal  0.526109  n/a   
 
 
-
 
NC_008312  Tery_4323  two component LuxR family transcriptional regulator  38.27 
 
 
215 aa  64.3  0.0000000006  Trichodesmium erythraeum IMS101  Bacteria  normal  0.115662  normal  0.727411 
 
 
-
 
NC_011729  PCC7424_0984  response regulator receiver modulated diguanylate cyclase  36.59 
 
 
353 aa  63.9  0.0000000007  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.194443 
 
 
-
 
NC_007577  PMT9312_1712  two component transcriptional regulator  38.55 
 
 
248 aa  63.9  0.0000000007  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2093  response regulator receiver protein  37 
 
 
129 aa  63.9  0.0000000007  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0790  multi-sensor signal transduction histidine kinase  38.04 
 
 
566 aa  63.9  0.0000000007  Cyanothece sp. PCC 7425  Bacteria  normal  0.391268  normal 
 
 
-
 
NC_012850  Rleg_2665  response regulator receiver protein  37.8 
 
 
133 aa  63.5  0.0000000008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0531061  normal 
 
 
-
 
NC_008751  Dvul_2720  multi-sensor signal transduction histidine kinase  39.19 
 
 
657 aa  63.9  0.0000000008  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.312815 
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  40.24 
 
 
312 aa  62.8  0.000000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0790  two component, sigma54 specific, transcriptional regulator, Fis family  37.63 
 
 
466 aa  62.8  0.000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009972  Haur_0720  two component transcriptional regulator  36.78 
 
 
236 aa  62.8  0.000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1483  response regulator receiver modulated diguanylate cyclase  35 
 
 
335 aa  62.8  0.000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.882912  n/a   
 
 
-
 
NC_012791  Vapar_0965  putative two component, sigma54 specific, transcriptional regulator, Fis family  37.8 
 
 
462 aa  63.5  0.000000001  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_2076  response regulator receiver modulated diguanylate cyclase  34.78 
 
 
481 aa  63.2  0.000000001  Cyanothece sp. PCC 8802  Bacteria  hitchhiker  0.00773841  normal 
 
 
-
 
NC_011726  PCC8801_2052  response regulator receiver modulated diguanylate cyclase  34.78 
 
 
481 aa  63.2  0.000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010623  Bphy_4785  response regulator receiver protein  46.27 
 
 
118 aa  63.2  0.000000001  Burkholderia phymatum STM815  Bacteria  normal  0.526141  normal  0.692787 
 
 
-
 
NC_013730  Slin_1040  response regulator receiver sensor signal transduction histidine kinase  36.59 
 
 
365 aa  62.4  0.000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  37.8 
 
 
225 aa  62.8  0.000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_007492  Pfl01_3849  response regulator receiver (CheY) modulated Serine phosphatase  41.33 
 
 
412 aa  62.4  0.000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.658628 
 
 
-
 
NC_013526  Tter_2067  two component transcriptional regulator, winged helix family  41.18 
 
 
233 aa  62.4  0.000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000016314  n/a   
 
 
-
 
NC_013947  Snas_3775  response regulator receiver and ANTAR domain-containing protein  42.86 
 
 
207 aa  62.8  0.000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.665226  normal  0.0118196 
 
 
-
 
NC_009943  Dole_1364  two component, sigma54 specific, Fis family transcriptional regulator  39.02 
 
 
485 aa  62.4  0.000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  36.14 
 
 
221 aa  62.4  0.000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1658  PAS/PAC sensor hybrid histidine kinase  40.79 
 
 
1036 aa  62.4  0.000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.705021 
 
 
-
 
NC_011729  PCC7424_2881  two component transcriptional regulator, LuxR family  39.53 
 
 
212 aa  61.6  0.000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009457  VC0395_A0150  sensory box sensor histidine kinase/response regulator  41.46 
 
 
1177 aa  61.6  0.000000003  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_2406  response regulator receiver domain-containing protein  37.8 
 
 
124 aa  61.6  0.000000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1117  two component, sigma54 specific, Fis family transcriptional regulator  39.51 
 
 
466 aa  62  0.000000003  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3066  two component transcriptional regulator, LuxR family  42.68 
 
 
305 aa  62  0.000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2505  response regulator receiver modulated metal dependent phosphohydrolase  39.78 
 
 
331 aa  62  0.000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2844  two component transcriptional regulator  40.74 
 
 
248 aa  61.2  0.000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_2566  two component transcriptional regulator, winged helix family  43.66 
 
 
229 aa  61.6  0.000000004  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000356007  hitchhiker  0.00345607 
 
 
-
 
NC_008554  Sfum_0648  response regulator receiver protein  38.16 
 
 
151 aa  61.6  0.000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2845  two component transcriptional regulator  35.8 
 
 
232 aa  61.2  0.000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.868207 
 
 
-
 
NC_007347  Reut_A0275  helix-turn-helix, Fis-type  43.37 
 
 
441 aa  61.2  0.000000005  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0063  response regulator receiver modulated metal dependent phosphohydrolase  38.55 
 
 
357 aa  61.2  0.000000005  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.56416e-22 
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  34.74 
 
 
451 aa  60.8  0.000000005  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_009972  Haur_2161  adenylate/guanylate cyclase with GAF sensor(s)  40.24 
 
 
1020 aa  61.2  0.000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0428251  n/a   
 
 
-
 
NC_011666  Msil_0255  two component transcriptional regulator, winged helix family  35.8 
 
 
231 aa  60.8  0.000000006  Methylocella silvestris BL2  Bacteria  n/a    normal  0.02112 
 
 
-
 
NC_007298  Daro_1804  two component, sigma54 specific, Fis family transcriptional regulator  41.98 
 
 
469 aa  60.8  0.000000006  Dechloromonas aromatica RCB  Bacteria  normal  0.0358984  normal  0.379225 
 
 
-
 
NC_013205  Aaci_2784  response regulator receiver protein  38.82 
 
 
125 aa  60.8  0.000000006  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.0945133  n/a   
 
 
-
 
NC_007794  Saro_1665  two component LuxR family transcriptional regulator  41.76 
 
 
307 aa  60.8  0.000000006  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3409  two component transcriptional regulator, winged helix family  39.76 
 
 
227 aa  60.8  0.000000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0765  response regulator receiver protein  44.74 
 
 
130 aa  60.8  0.000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.474534  n/a   
 
 
-
 
NC_009921  Franean1_6588  two component transcriptional regulator  45.12 
 
 
229 aa  60.5  0.000000007  Frankia sp. EAN1pec  Bacteria  normal  0.13217  normal 
 
 
-
 
NC_013501  Rmar_0987  two component transcriptional regulator, winged helix family  40 
 
 
233 aa  60.5  0.000000007  Rhodothermus marinus DSM 4252  Bacteria  normal  0.195539  n/a   
 
 
-
 
NC_010511  M446_0247  PAS/PAC sensor hybrid histidine kinase  38.46 
 
 
640 aa  60.5  0.000000007  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0678153 
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  40.3 
 
 
476 aa  60.5  0.000000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_010524  Lcho_0045  adenylate/guanylate cyclase  41.46 
 
 
382 aa  60.5  0.000000008  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  36.59 
 
 
456 aa  60.5  0.000000008  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0616674 
 
 
-
 
NC_014151  Cfla_1269  response regulator receiver protein  43.18 
 
 
359 aa  60.5  0.000000008  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.324523 
 
 
-
 
NC_007802  Jann_0536  two component transcriptional regulator  37.8 
 
 
233 aa  60.5  0.000000008  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0402  two component transcriptional regulator  40.74 
 
 
235 aa  60.5  0.000000008  Sphingomonas wittichii RW1  Bacteria  normal  0.344138  normal  0.0526207 
 
 
-
 
NC_009943  Dole_0622  two component transcriptional regulator  36.36 
 
 
240 aa  60.5  0.000000009  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1066  two component transcriptional regulator, winged helix family  38.27 
 
 
222 aa  60.1  0.000000009  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_1037  response regulator receiver protein  37.8 
 
 
247 aa  60.5  0.000000009  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0649  response regulator receiver Signal transduction histidine kinase  35.37 
 
 
387 aa  60.1  0.000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  0.736737  normal  0.226718 
 
 
-
 
NC_007493  RSP_1681  two-component transcriptional regulator  36.59 
 
 
233 aa  60.1  0.000000009  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0544  two component transcriptional regulator  37.8 
 
 
227 aa  60.1  0.000000009  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1791  two component transcriptional regulator, winged helix family  39.02 
 
 
240 aa  60.1  0.000000009  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000000442123 
 
 
-
 
NC_013501  Rmar_0589  response regulator receiver modulated serine phosphatase  38.1 
 
 
371 aa  60.1  0.000000009  Rhodothermus marinus DSM 4252  Bacteria  normal  0.420228  n/a   
 
 
-
 
NC_009616  Tmel_0460  response regulator receiver protein  33.72 
 
 
119 aa  59.7  0.00000001  Thermosipho melanesiensis BI429  Bacteria  normal  0.903697  n/a   
 
 
-
 
NC_013946  Mrub_1402  two component transcriptional regulator, winged helix family  39.02 
 
 
241 aa  59.7  0.00000001  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.154165 
 
 
-
 
NC_010730  SYO3AOP1_0590  two component, sigma54 specific, transcriptional regulator, Fis family  38.1 
 
 
440 aa  59.7  0.00000001  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0314  two component transcriptional regulator  36.59 
 
 
233 aa  60.1  0.00000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.765921 
 
 
-
 
NC_007413  Ava_2149  response regulator receiver Signal transduction histidine kinase  36.36 
 
 
407 aa  60.1  0.00000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.142048 
 
 
-
 
NC_007498  Pcar_1726  two component signal transduction response regulator  40.96 
 
 
227 aa  60.1  0.00000001  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000000000000605334  n/a   
 
 
-
 
NC_010511  M446_0225  two component transcriptional regulator  34.57 
 
 
238 aa  60.1  0.00000001  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0106464 
 
 
-
 
NC_007794  Saro_2907  two component transcriptional regulator  39.51 
 
 
250 aa  59.7  0.00000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5433  two component transcriptional regulator, winged helix family  34.57 
 
 
238 aa  60.1  0.00000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.177781  n/a   
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  36.59 
 
 
216 aa  60.1  0.00000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  36.59 
 
 
216 aa  60.1  0.00000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
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