Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A0150 |
Symbol | |
ID | 5135183 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 149020 |
End bp | 152553 |
Gene Length | 3534 bp |
Protein Length | 1177 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640531610 |
Product | sensory box sensor histidine kinase/response regulator |
Protein accession | YP_001216115 |
Protein GI | 147675649 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCGTCTAT GCCCACGCTT TAGCTTGGAC TTACTTGTCA AAGTAAAAAA ACTCGTTAAT TTCGTTACTT TAGGTTTTTC TTGTCTATCA CCCACTCATG CTTGGCGATC GCCGCAGAGT TTCACCGAAA GTAACACCTT AATTATGTTT AGGTTCTATC GAAAACAAAA ATTCAAACGC CTGCAAAATA CCTTGATGGC TGCGTTTTTG GCCCTCAGCA TTATTCCTTT GACCATTACT GCGTTGTTTT TCCTACATTC ACACAGTAAA GATCTGGAGC AGCAGAGCAC TTCTTACCTC GTTTCTGTTC GGGATAATAA ACAGCAACAG GTCATCGACT ACATGATGGC CAAAGAGTCG GAAGTGATGG GTTTTGTTCG CTCCGAGCTG GCTTATGCCA GTGGCGGGCG TTTTTATGGT CTGGTGAATG CTTTCCAGCG TTTAGACGTC AGTATTGAAG CGGCTCGTGA ACATGCTCAG CAGCGCTATA TCACCGGATC GGGTGACCAA ATAAAAACCT CGGTGCTCCC CCAATCAAGC AGCTACGTGG GCAGTGAACG CTATCGACTG CTGCATAAAC GCTACCACTG GGCTTACTTA GAACTGCTGA AACGGTCGGA CTTTGATGAC ATTTTATTGG TCGATATTGA TGGCAACGTC GTTTATTCGA TTTATAAATA CGACAATTTT GGCACCAACT TATTAACGGG CAAATACCAA GACACCAATC TAGGCCATAC CTTCAAGCGT TTAGAACAAA CGGTCAATGA ACAGCGCAAA ACCAACGAAG ATTTCACCCC TGTCGTGATT TCTGATTTCG TACAAGAGGA TGGTAAACAA TACGCTTGGC TTGGCGCACC GATTATTCAG CAAGGCTACT TGCATAGTTA CGCGATGTTC CGCTTACCAA GCAATGCGAT CACCAAACTC ATCGCAGAAG GCAGTAGCAA TCCTTCGATG CAAACCATTC TAGTGGGACA AGATCACCGC TCAAGAACCT TAACTTCCGC CGAAATTGCG GTTGAAAAAA GTAAAGCTGT GGTCGATTTA GCCTTATCGG GCAAACGCGC CGTAGGCACT TACACCAATA CCGATGGTGA ACAGATCATC GCGGCCTACG CACCGATCAA TTTGAAAAAT ATCCATTGGG CTCTGGTGGT TGAACTGCCA GAGAAAGAAG CGTTTGCTCG CGTTCGTCAG TTAGAGAAAC TGTTTGTTTT TGCGATGTTG ACGGCTATCG TCTTAGTGGT CATCGCCTCG CATTACCTTT CCAATTTCAT TACCTCACCG CTTTTGAAGC TGACATGGGC AGCCGAACGT GTTTCGGCAG GCGATCTTGA TGAAGCCATG ATCAATACCG AACGCAAAGA TGAAATTGGC CGCTTGGCGG TCAGTTTTGA GCGTATGCAG CGTTCCATTC GCGAAAAAAT ATCGCTGATC AAATCGCAAA ATAAAGAGTT AGAGAGCAAC TTACTGATCA TTCGTAAGCA AAACGATGAG TTACAGCTAG CGAATAAGCT AAAAGATGAG TTCCTCGCGA CCACATCACA TGAATTACGC ACCCCATTGC ATGGCATGAT TGGTATTGCC GAAGCCCTGA TCTCGGGGGC AAATGGCCCG ATTTCAGCAG CGCACAAGTA TCAACTCGAC ATCATTATCA GCAGTGGGCA GCGCTTGGCG ACTCTGGTTG ATGATCTACT CGATTACCAC AAAATGCGCT ATGGCGCGCT GGATATTCAA AGGTGTGCCG TCGATTTATC GAGCGCTACG CGCTTAGTCT TGGAGCTTTC TCACCATTTA CTTGGCAAGA AAACGCTGCG CATTATTAAT CAAGTCTCAG AACAACCGGT CTGGGTTTCT GCGGATCCTC AACGCTTAGA GCAAGTCCTG TATAACTTGA TCGGCAATGC CATTAAGTAC ACTTCCGAAG GCAAAATTGT TATCTCCGCA ACCTATATTG ACGATAAAGT GCGCGTGCAG GTGGTGGATA CAGGTCAAGG GATTCCGGCA GAACAACTGG AGCACATCTT TGAGCCATTG ATTCAAGCGG GCCATGATGC GAGTCGCTAT CGCCAAGGCG CAGGACTCGG GCTTTCCATC AGTCGTCAGT TAATCGAATT GATGCACGGC ACTCTCTACG TAAGTAGTCA GCCGATGGTT GGCACTACCT TTAGCTTCAC GCTGCCTCTG GCGAGCGAAG AAGAGATTGC TCAAGCGCGC TTGACCGAAC TCCCCCACTT CCAAGCACCG GAAGTGTTGG ATTCTGAACT GCCCGAGCAA AGCAACTTAC CCGAAAATGA ACATGGCCCA CTTCTGTTGG TCGCCGATGA TGAACCAGTC AACCTGCGTG TGCTGGACAG CTTTTTACGT CTTGAAGGTT ATCGCGTACA TACCGCGCAA GATGGCCATC AAGTACTTGA AGCAATTAAA CGTGAAAAAC CTGAATTGGT GTTACTCGAC ATCATGATGC CAGGCATGAG CGGTTATCAA GTGTGTGAAA AACTTCGACA AACTTACGAC CACGCTGAAC TGCCTATTAT TATGCTGACG GCTCTCAACC AGTCTGATGA CCGGGTACGA GGGTTTGAAG CTGGAGCCAA TGACTACTTA TCCAAACCAT TCAACAAACA AGAGCTGGCC GCGCGCATTG TCGCTCACCT CACGGCGAGC AAAGCCGAAC TGCGCCGCAT TGAGAATGCC CAACTGCAAA AAGAGTTGAA ACATCGCGCT ATGGTAGAAG CGAGCCTATT GGAAACCCAA GGCCGATTAT TGGAACAGTT AGAATCTGCG CCAGAAGCGA TTTTGTGCGT TAAAGAGGGC AATAAAGTAC GTTTTGCTAA CGAAGCGGCA GCACGTTTAT TTAGACGTAC CCCTGAGCAG CTCAAACGCT CCAACGCCGA AGAACTGATT GCTCCTAAAT TCTTGAATAT TGAGCAAGAG CATTACTGCG GCAATATTGA TGTTTACGTA GATGATGTGC GCCAGCACCT CTCTGCCGAT GTCCTTCGCT TGCCGCAAGG TTCTGGCTTA CAAGCGATGT ACATTTTTAA TGTCGGCGGC AGCGTCAATG CCGCGCGGAT TCATAACCTC GAAACCGCGG TAGAAGCCCT GTCTAGCTAT GCCTTCGAAG GCGATAAAGA CAAGCTGCAA AAACTCAAGG AACTGGGTGG TGAGTTTACT CGTCTTGCAG ATAAAGCCTC GGGCGAGTAT CAATCGAAAC AAGATTTGAT GCGTGCCGTG TTAGTCGAAG CCATGACCAG TGCCTTGAAC TATTGGGAAC GAGTCTCAGG GCAAAGCAAG TTCACGTTTG CCGAACAAAG TGGCTTGTGG CGCGTTTATC TTGACCGCAG CACCCTACAA ACTCGTACCC TAGACAAATA CTTACGAATT GAGACACTGC CTAAAACACC GCGTTGGCGA ACCGTACTGA ACTCGCTCGA CTACATTCTT GAGCATTGCA AAGAAGCAGG CCCTGAACGC ACTCACATCG AAATGCAGCG CGATAAATTG CAAAAACTCC TGACCAGTGA ATAA
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Protein sequence | MRLCPRFSLD LLVKVKKLVN FVTLGFSCLS PTHAWRSPQS FTESNTLIMF RFYRKQKFKR LQNTLMAAFL ALSIIPLTIT ALFFLHSHSK DLEQQSTSYL VSVRDNKQQQ VIDYMMAKES EVMGFVRSEL AYASGGRFYG LVNAFQRLDV SIEAAREHAQ QRYITGSGDQ IKTSVLPQSS SYVGSERYRL LHKRYHWAYL ELLKRSDFDD ILLVDIDGNV VYSIYKYDNF GTNLLTGKYQ DTNLGHTFKR LEQTVNEQRK TNEDFTPVVI SDFVQEDGKQ YAWLGAPIIQ QGYLHSYAMF RLPSNAITKL IAEGSSNPSM QTILVGQDHR SRTLTSAEIA VEKSKAVVDL ALSGKRAVGT YTNTDGEQII AAYAPINLKN IHWALVVELP EKEAFARVRQ LEKLFVFAML TAIVLVVIAS HYLSNFITSP LLKLTWAAER VSAGDLDEAM INTERKDEIG RLAVSFERMQ RSIREKISLI KSQNKELESN LLIIRKQNDE LQLANKLKDE FLATTSHELR TPLHGMIGIA EALISGANGP ISAAHKYQLD IIISSGQRLA TLVDDLLDYH KMRYGALDIQ RCAVDLSSAT RLVLELSHHL LGKKTLRIIN QVSEQPVWVS ADPQRLEQVL YNLIGNAIKY TSEGKIVISA TYIDDKVRVQ VVDTGQGIPA EQLEHIFEPL IQAGHDASRY RQGAGLGLSI SRQLIELMHG TLYVSSQPMV GTTFSFTLPL ASEEEIAQAR LTELPHFQAP EVLDSELPEQ SNLPENEHGP LLLVADDEPV NLRVLDSFLR LEGYRVHTAQ DGHQVLEAIK REKPELVLLD IMMPGMSGYQ VCEKLRQTYD HAELPIIMLT ALNQSDDRVR GFEAGANDYL SKPFNKQELA ARIVAHLTAS KAELRRIENA QLQKELKHRA MVEASLLETQ GRLLEQLESA PEAILCVKEG NKVRFANEAA ARLFRRTPEQ LKRSNAEELI APKFLNIEQE HYCGNIDVYV DDVRQHLSAD VLRLPQGSGL QAMYIFNVGG SVNAARIHNL ETAVEALSSY AFEGDKDKLQ KLKELGGEFT RLADKASGEY QSKQDLMRAV LVEAMTSALN YWERVSGQSK FTFAEQSGLW RVYLDRSTLQ TRTLDKYLRI ETLPKTPRWR TVLNSLDYIL EHCKEAGPER THIEMQRDKL QKLLTSE
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