| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0150 |
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| Symbol | |
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| ID | 5135183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 149020 |
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| End bp | 152553 |
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| Gene Length | 3534 bp |
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| Protein Length | 1177 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640531610 |
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| Product | sensory box sensor histidine kinase/response regulator |
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| Protein accession | YP_001216115 |
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| Protein GI | 147675649 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCGTCTAT GCCCACGCTT TAGCTTGGAC TTACTTGTCA AAGTAAAAAA ACTCGTTAAT
TTCGTTACTT TAGGTTTTTC TTGTCTATCA CCCACTCATG CTTGGCGATC GCCGCAGAGT
TTCACCGAAA GTAACACCTT AATTATGTTT AGGTTCTATC GAAAACAAAA ATTCAAACGC
CTGCAAAATA CCTTGATGGC TGCGTTTTTG GCCCTCAGCA TTATTCCTTT GACCATTACT
GCGTTGTTTT TCCTACATTC ACACAGTAAA GATCTGGAGC AGCAGAGCAC TTCTTACCTC
GTTTCTGTTC GGGATAATAA ACAGCAACAG GTCATCGACT ACATGATGGC CAAAGAGTCG
GAAGTGATGG GTTTTGTTCG CTCCGAGCTG GCTTATGCCA GTGGCGGGCG TTTTTATGGT
CTGGTGAATG CTTTCCAGCG TTTAGACGTC AGTATTGAAG CGGCTCGTGA ACATGCTCAG
CAGCGCTATA TCACCGGATC GGGTGACCAA ATAAAAACCT CGGTGCTCCC CCAATCAAGC
AGCTACGTGG GCAGTGAACG CTATCGACTG CTGCATAAAC GCTACCACTG GGCTTACTTA
GAACTGCTGA AACGGTCGGA CTTTGATGAC ATTTTATTGG TCGATATTGA TGGCAACGTC
GTTTATTCGA TTTATAAATA CGACAATTTT GGCACCAACT TATTAACGGG CAAATACCAA
GACACCAATC TAGGCCATAC CTTCAAGCGT TTAGAACAAA CGGTCAATGA ACAGCGCAAA
ACCAACGAAG ATTTCACCCC TGTCGTGATT TCTGATTTCG TACAAGAGGA TGGTAAACAA
TACGCTTGGC TTGGCGCACC GATTATTCAG CAAGGCTACT TGCATAGTTA CGCGATGTTC
CGCTTACCAA GCAATGCGAT CACCAAACTC ATCGCAGAAG GCAGTAGCAA TCCTTCGATG
CAAACCATTC TAGTGGGACA AGATCACCGC TCAAGAACCT TAACTTCCGC CGAAATTGCG
GTTGAAAAAA GTAAAGCTGT GGTCGATTTA GCCTTATCGG GCAAACGCGC CGTAGGCACT
TACACCAATA CCGATGGTGA ACAGATCATC GCGGCCTACG CACCGATCAA TTTGAAAAAT
ATCCATTGGG CTCTGGTGGT TGAACTGCCA GAGAAAGAAG CGTTTGCTCG CGTTCGTCAG
TTAGAGAAAC TGTTTGTTTT TGCGATGTTG ACGGCTATCG TCTTAGTGGT CATCGCCTCG
CATTACCTTT CCAATTTCAT TACCTCACCG CTTTTGAAGC TGACATGGGC AGCCGAACGT
GTTTCGGCAG GCGATCTTGA TGAAGCCATG ATCAATACCG AACGCAAAGA TGAAATTGGC
CGCTTGGCGG TCAGTTTTGA GCGTATGCAG CGTTCCATTC GCGAAAAAAT ATCGCTGATC
AAATCGCAAA ATAAAGAGTT AGAGAGCAAC TTACTGATCA TTCGTAAGCA AAACGATGAG
TTACAGCTAG CGAATAAGCT AAAAGATGAG TTCCTCGCGA CCACATCACA TGAATTACGC
ACCCCATTGC ATGGCATGAT TGGTATTGCC GAAGCCCTGA TCTCGGGGGC AAATGGCCCG
ATTTCAGCAG CGCACAAGTA TCAACTCGAC ATCATTATCA GCAGTGGGCA GCGCTTGGCG
ACTCTGGTTG ATGATCTACT CGATTACCAC AAAATGCGCT ATGGCGCGCT GGATATTCAA
AGGTGTGCCG TCGATTTATC GAGCGCTACG CGCTTAGTCT TGGAGCTTTC TCACCATTTA
CTTGGCAAGA AAACGCTGCG CATTATTAAT CAAGTCTCAG AACAACCGGT CTGGGTTTCT
GCGGATCCTC AACGCTTAGA GCAAGTCCTG TATAACTTGA TCGGCAATGC CATTAAGTAC
ACTTCCGAAG GCAAAATTGT TATCTCCGCA ACCTATATTG ACGATAAAGT GCGCGTGCAG
GTGGTGGATA CAGGTCAAGG GATTCCGGCA GAACAACTGG AGCACATCTT TGAGCCATTG
ATTCAAGCGG GCCATGATGC GAGTCGCTAT CGCCAAGGCG CAGGACTCGG GCTTTCCATC
AGTCGTCAGT TAATCGAATT GATGCACGGC ACTCTCTACG TAAGTAGTCA GCCGATGGTT
GGCACTACCT TTAGCTTCAC GCTGCCTCTG GCGAGCGAAG AAGAGATTGC TCAAGCGCGC
TTGACCGAAC TCCCCCACTT CCAAGCACCG GAAGTGTTGG ATTCTGAACT GCCCGAGCAA
AGCAACTTAC CCGAAAATGA ACATGGCCCA CTTCTGTTGG TCGCCGATGA TGAACCAGTC
AACCTGCGTG TGCTGGACAG CTTTTTACGT CTTGAAGGTT ATCGCGTACA TACCGCGCAA
GATGGCCATC AAGTACTTGA AGCAATTAAA CGTGAAAAAC CTGAATTGGT GTTACTCGAC
ATCATGATGC CAGGCATGAG CGGTTATCAA GTGTGTGAAA AACTTCGACA AACTTACGAC
CACGCTGAAC TGCCTATTAT TATGCTGACG GCTCTCAACC AGTCTGATGA CCGGGTACGA
GGGTTTGAAG CTGGAGCCAA TGACTACTTA TCCAAACCAT TCAACAAACA AGAGCTGGCC
GCGCGCATTG TCGCTCACCT CACGGCGAGC AAAGCCGAAC TGCGCCGCAT TGAGAATGCC
CAACTGCAAA AAGAGTTGAA ACATCGCGCT ATGGTAGAAG CGAGCCTATT GGAAACCCAA
GGCCGATTAT TGGAACAGTT AGAATCTGCG CCAGAAGCGA TTTTGTGCGT TAAAGAGGGC
AATAAAGTAC GTTTTGCTAA CGAAGCGGCA GCACGTTTAT TTAGACGTAC CCCTGAGCAG
CTCAAACGCT CCAACGCCGA AGAACTGATT GCTCCTAAAT TCTTGAATAT TGAGCAAGAG
CATTACTGCG GCAATATTGA TGTTTACGTA GATGATGTGC GCCAGCACCT CTCTGCCGAT
GTCCTTCGCT TGCCGCAAGG TTCTGGCTTA CAAGCGATGT ACATTTTTAA TGTCGGCGGC
AGCGTCAATG CCGCGCGGAT TCATAACCTC GAAACCGCGG TAGAAGCCCT GTCTAGCTAT
GCCTTCGAAG GCGATAAAGA CAAGCTGCAA AAACTCAAGG AACTGGGTGG TGAGTTTACT
CGTCTTGCAG ATAAAGCCTC GGGCGAGTAT CAATCGAAAC AAGATTTGAT GCGTGCCGTG
TTAGTCGAAG CCATGACCAG TGCCTTGAAC TATTGGGAAC GAGTCTCAGG GCAAAGCAAG
TTCACGTTTG CCGAACAAAG TGGCTTGTGG CGCGTTTATC TTGACCGCAG CACCCTACAA
ACTCGTACCC TAGACAAATA CTTACGAATT GAGACACTGC CTAAAACACC GCGTTGGCGA
ACCGTACTGA ACTCGCTCGA CTACATTCTT GAGCATTGCA AAGAAGCAGG CCCTGAACGC
ACTCACATCG AAATGCAGCG CGATAAATTG CAAAAACTCC TGACCAGTGA ATAA
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| Protein sequence | MRLCPRFSLD LLVKVKKLVN FVTLGFSCLS PTHAWRSPQS FTESNTLIMF RFYRKQKFKR
LQNTLMAAFL ALSIIPLTIT ALFFLHSHSK DLEQQSTSYL VSVRDNKQQQ VIDYMMAKES
EVMGFVRSEL AYASGGRFYG LVNAFQRLDV SIEAAREHAQ QRYITGSGDQ IKTSVLPQSS
SYVGSERYRL LHKRYHWAYL ELLKRSDFDD ILLVDIDGNV VYSIYKYDNF GTNLLTGKYQ
DTNLGHTFKR LEQTVNEQRK TNEDFTPVVI SDFVQEDGKQ YAWLGAPIIQ QGYLHSYAMF
RLPSNAITKL IAEGSSNPSM QTILVGQDHR SRTLTSAEIA VEKSKAVVDL ALSGKRAVGT
YTNTDGEQII AAYAPINLKN IHWALVVELP EKEAFARVRQ LEKLFVFAML TAIVLVVIAS
HYLSNFITSP LLKLTWAAER VSAGDLDEAM INTERKDEIG RLAVSFERMQ RSIREKISLI
KSQNKELESN LLIIRKQNDE LQLANKLKDE FLATTSHELR TPLHGMIGIA EALISGANGP
ISAAHKYQLD IIISSGQRLA TLVDDLLDYH KMRYGALDIQ RCAVDLSSAT RLVLELSHHL
LGKKTLRIIN QVSEQPVWVS ADPQRLEQVL YNLIGNAIKY TSEGKIVISA TYIDDKVRVQ
VVDTGQGIPA EQLEHIFEPL IQAGHDASRY RQGAGLGLSI SRQLIELMHG TLYVSSQPMV
GTTFSFTLPL ASEEEIAQAR LTELPHFQAP EVLDSELPEQ SNLPENEHGP LLLVADDEPV
NLRVLDSFLR LEGYRVHTAQ DGHQVLEAIK REKPELVLLD IMMPGMSGYQ VCEKLRQTYD
HAELPIIMLT ALNQSDDRVR GFEAGANDYL SKPFNKQELA ARIVAHLTAS KAELRRIENA
QLQKELKHRA MVEASLLETQ GRLLEQLESA PEAILCVKEG NKVRFANEAA ARLFRRTPEQ
LKRSNAEELI APKFLNIEQE HYCGNIDVYV DDVRQHLSAD VLRLPQGSGL QAMYIFNVGG
SVNAARIHNL ETAVEALSSY AFEGDKDKLQ KLKELGGEFT RLADKASGEY QSKQDLMRAV
LVEAMTSALN YWERVSGQSK FTFAEQSGLW RVYLDRSTLQ TRTLDKYLRI ETLPKTPRWR
TVLNSLDYIL EHCKEAGPER THIEMQRDKL QKLLTSE
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