More than 300 homologs were found in PanDaTox collection
for query gene Vapar_0965 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007298  Daro_1804  two component, sigma54 specific, Fis family transcriptional regulator  70.77 
 
 
469 aa  635    Dechloromonas aromatica RCB  Bacteria  normal  0.0358984  normal  0.379225 
 
 
-
 
NC_007908  Rfer_2786  two component, sigma54 specific, Fis family transcriptional regulator  80.53 
 
 
477 aa  742    Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1117  two component, sigma54 specific, Fis family transcriptional regulator  84.27 
 
 
466 aa  759    Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0965  putative two component, sigma54 specific, transcriptional regulator, Fis family  100 
 
 
462 aa  930    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0872  two component, sigma54 specific, Fis family transcriptional regulator  81.37 
 
 
471 aa  749    Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0650247 
 
 
-
 
NC_008781  Pnap_3376  two component, sigma54 specific, Fis family transcriptional regulator  81.47 
 
 
462 aa  745    Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.193945  normal 
 
 
-
 
NC_011662  Tmz1t_1222  putative two component, sigma54 specific, transcriptional regulator, Fis family  68.51 
 
 
475 aa  592  1e-168  Thauera sp. MZ1T  Bacteria  normal  0.20015  n/a   
 
 
-
 
NC_007947  Mfla_0911  two component, sigma54 specific, Fis family transcriptional regulator  61.76 
 
 
456 aa  583  1.0000000000000001e-165  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1055  two component, sigma54 specific, Fis family transcriptional regulator  61.76 
 
 
456 aa  583  1.0000000000000001e-165  Methylobacillus flagellatus KT  Bacteria  normal  0.523432  normal 
 
 
-
 
NC_007614  Nmul_A1161  two component, sigma54 specific, Fis family transcriptional regulator  60.36 
 
 
453 aa  533  1e-150  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_0717  two component, sigma54 specific, Fis family transcriptional regulator  59.69 
 
 
466 aa  533  1e-150  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2494  response regulator receiver protein  61.47 
 
 
452 aa  531  1e-149  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4272  sigma-54 dependent response regulator  54.99 
 
 
457 aa  525  1e-148  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0498  two component response regulator  60.9 
 
 
451 aa  528  1e-148  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B2721  sigma-54 dependent transcriptional regulator/response regulator  58.8 
 
 
445 aa  526  1e-148  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A2938  transcriptional regulator ZraR  58.8 
 
 
445 aa  525  1e-147  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2825  transcriptional regulator ZraR  58.8 
 
 
445 aa  525  1e-147  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.479389  normal 
 
 
-
 
NC_011094  SeSA_A2804  transcriptional regulatory protein ZraR  58.8 
 
 
445 aa  524  1e-147  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2763  transcriptional regulator ZraR  58.8 
 
 
445 aa  525  1e-147  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_0785  Fis family two component transcriptional regulator  58.31 
 
 
456 aa  516  1.0000000000000001e-145  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1226  putative two component, sigma54 specific, transcriptional regulator, Fis family  58.56 
 
 
445 aa  514  1e-144  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1085  putative two component, sigma54 specific, transcriptional regulator, Fis family  58.56 
 
 
445 aa  511  1e-144  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3049  putative two component, sigma54 specific, transcriptional regulator, Fis family  58.56 
 
 
445 aa  513  1e-144  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3651  two component, sigma54 specific, Fis family transcriptional regulator  58.11 
 
 
445 aa  511  1e-143  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2768  putative two component, sigma54 specific, transcriptional regulator, Fis family  58.11 
 
 
445 aa  510  1e-143  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1152  sigma-54 dependent DNA-binding response regulator  57.43 
 
 
445 aa  506  9.999999999999999e-143  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2771  two component Fis family transcriptional regulator  60.49 
 
 
449 aa  508  9.999999999999999e-143  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.195731 
 
 
-
 
NC_010465  YPK_1259  two component, sigma54 specific, Fis family transcriptional regulator  57.43 
 
 
445 aa  506  9.999999999999999e-143  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3039  two component, sigma54 specific, Fis family transcriptional regulator  57.66 
 
 
445 aa  505  9.999999999999999e-143  Enterobacter sp. 638  Bacteria  normal  0.992832  normal  0.337936 
 
 
-
 
NC_010159  YpAngola_A3629  two-component system response regulator  57.43 
 
 
445 aa  506  9.999999999999999e-143  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_2707  sigma-54 dependent response regulator  58.13 
 
 
444 aa  502  1e-141  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2707  sigma-54 dependent response regulator  58.13 
 
 
444 aa  502  1e-141  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2839  sigma-54 dependent response regulator  58.13 
 
 
444 aa  502  1e-141  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02446  predicted DNA-binding response regulator in two-component system  57.91 
 
 
444 aa  501  1e-140  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1114  putative two component, sigma54 specific, transcriptional regulator, Fis family  57.91 
 
 
444 aa  501  1e-140  Escherichia coli DH1  Bacteria  normal  0.922386  n/a   
 
 
-
 
NC_002977  MCA1713  sigma-54 dependent DNA-binding response regulator  57.4 
 
 
460 aa  501  1e-140  Methylococcus capsulatus str. Bath  Bacteria  normal  0.91858  n/a   
 
 
-
 
NC_012892  B21_02410  hypothetical protein  57.91 
 
 
444 aa  501  1e-140  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E2919  sigma-54 dependent response regulator  57.91 
 
 
444 aa  501  1e-140  Shigella boydii CDC 3083-94  Bacteria  normal  0.70731  n/a   
 
 
-
 
NC_011353  ECH74115_3788  sigma-54 dependent response regulator  57.91 
 
 
444 aa  501  1e-140  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_1123  two component, sigma54 specific, Fis family transcriptional regulator  57.91 
 
 
444 aa  501  1e-140  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1340  two component, sigma54 specific, Fis family transcriptional regulator  56.3 
 
 
457 aa  498  1e-140  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01723  two-component system response regulator  56.03 
 
 
446 aa  493  9.999999999999999e-139  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1603  two component, sigma54 specific, Fis family transcriptional regulator  55.51 
 
 
449 aa  491  9.999999999999999e-139  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_2955  sigma-54 dependent DNA-binding response regulator, putative  56.54 
 
 
457 aa  478  1e-134  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_2187  two component, sigma54 specific, Fis family transcriptional regulator  53.48 
 
 
456 aa  478  1e-134  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2568  two component, sigma54 specific, transcriptional regulator, Fis family  56.54 
 
 
457 aa  478  1e-134  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.0491002  normal 
 
 
-
 
NC_011761  AFE_0447  sigma-54 dependent DNA-binding response regulator  49.1 
 
 
461 aa  406  1.0000000000000001e-112  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0608  two component, sigma54 specific, transcriptional regulator, Fis family  49.1 
 
 
461 aa  406  1.0000000000000001e-112  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2292  two component, sigma54 specific, Fis family transcriptional regulator  44.44 
 
 
462 aa  387  1e-106  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0702  two component, sigma54 specific, Fis family transcriptional regulator  42.35 
 
 
460 aa  364  2e-99  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1428  two component, sigma-54 specific, Fis family transcriptional regulator  42.09 
 
 
460 aa  362  6e-99  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0963  sigma-54 dependent DNA-binding response regulator  42.38 
 
 
467 aa  362  8e-99  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2694  two component, sigma54 specific, transcriptional regulator, Fis family  41.37 
 
 
461 aa  360  2e-98  Geobacter sp. M21  Bacteria  n/a    hitchhiker  7.62039e-17 
 
 
-
 
NC_011146  Gbem_1522  two component, sigma54 specific, transcriptional regulator, Fis family  41.81 
 
 
461 aa  361  2e-98  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4454  transcriptional regulatory protein ZraR  45.1 
 
 
441 aa  355  5.999999999999999e-97  Escherichia coli SMS-3-5  Bacteria  normal  0.209341  hitchhiker  0.000519331 
 
 
-
 
NC_010468  EcolC_1430  acetoacetate metabolism regulatory protein AtoC  42.58 
 
 
461 aa  355  6.999999999999999e-97  Escherichia coli ATCC 8739  Bacteria  normal  0.324678  hitchhiker  0.00137179 
 
 
-
 
NC_011080  SNSL254_A4507  transcriptional regulatory protein ZraR  45.81 
 
 
441 aa  355  7.999999999999999e-97  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0570238 
 
 
-
 
CP001509  ECD_02147  fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein  42.58 
 
 
461 aa  354  2e-96  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1438  two component, sigma54 specific, transcriptional regulator, Fis family  42.58 
 
 
461 aa  354  2e-96  Escherichia coli DH1  Bacteria  normal  0.445705  n/a   
 
 
-
 
NC_009800  EcHS_A2361  acetoacetate metabolism regulatory protein AtoC  42.58 
 
 
461 aa  354  2e-96  Escherichia coli HS  Bacteria  normal  0.18992  n/a   
 
 
-
 
NC_012892  B21_02106  hypothetical protein  42.58 
 
 
461 aa  354  2e-96  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0198  two component, sigma54 specific, transcriptional regulator, Fis family  39.29 
 
 
461 aa  353  4e-96  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2369  acetoacetate metabolism regulatory protein AtoC  42.2 
 
 
461 aa  353  5e-96  Escherichia coli SMS-3-5  Bacteria  normal  0.0790211  normal 
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  43.58 
 
 
454 aa  352  5.9999999999999994e-96  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4238  transcriptional regulatory protein ZraR  44.87 
 
 
441 aa  352  7e-96  Escherichia coli HS  Bacteria  normal  0.020936  n/a   
 
 
-
 
NC_009675  Anae109_3581  two component, sigma54 specific, Fis family transcriptional regulator  42.13 
 
 
490 aa  352  8e-96  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.0374719 
 
 
-
 
NC_010658  SbBS512_E4497  transcriptional regulatory protein ZraR  45.03 
 
 
441 aa  351  2e-95  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.0000279415  n/a   
 
 
-
 
CP001509  ECD_03881  fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein  45.03 
 
 
441 aa  350  3e-95  Escherichia coli BL21(DE3)  Bacteria  normal  0.0124745  n/a   
 
 
-
 
NC_011083  SeHA_C4505  transcriptional regulatory protein ZraR  45.12 
 
 
441 aa  350  3e-95  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.11324 
 
 
-
 
NC_010468  EcolC_4021  transcriptional regulatory protein ZraR  45.03 
 
 
441 aa  350  3e-95  Escherichia coli ATCC 8739  Bacteria  normal  0.0128092  normal  0.0227655 
 
 
-
 
NC_012892  B21_03834  hypothetical protein  45.03 
 
 
441 aa  350  3e-95  Escherichia coli BL21  Bacteria  normal  0.0118236  n/a   
 
 
-
 
NC_009801  EcE24377A_4549  transcriptional regulatory protein ZraR  44.8 
 
 
441 aa  350  4e-95  Escherichia coli E24377A  Bacteria  hitchhiker  0.000369022  n/a   
 
 
-
 
CP001637  EcDH1_3989  two component, sigma54 specific, transcriptional regulator, Fis family  45.03 
 
 
441 aa  349  5e-95  Escherichia coli DH1  Bacteria  normal  0.716922  n/a   
 
 
-
 
NC_011205  SeD_A4581  transcriptional regulatory protein ZraR  44.88 
 
 
441 aa  348  8e-95  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4418  transcriptional regulatory protein ZraR  44.65 
 
 
441 aa  348  1e-94  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.298897  n/a   
 
 
-
 
NC_011353  ECH74115_5475  transcriptional regulatory protein ZraR  44.39 
 
 
441 aa  348  2e-94  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A4385  transcriptional regulatory protein ZraR  44.65 
 
 
441 aa  348  2e-94  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.712665 
 
 
-
 
NC_011891  A2cp1_3623  two component, sigma54 specific, transcriptional regulator, Fis family  41.31 
 
 
489 aa  347  3e-94  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.568637  n/a   
 
 
-
 
NC_011145  AnaeK_3555  two component, sigma54 specific, transcriptional regulator, Fis family  41.31 
 
 
489 aa  347  3e-94  Anaeromyxobacter sp. K  Bacteria  normal  0.369206  n/a   
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  41.83 
 
 
464 aa  346  4e-94  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_009675  Anae109_1798  two component, sigma54 specific, Fis family transcriptional regulator  40.65 
 
 
466 aa  347  4e-94  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.634231  normal 
 
 
-
 
NC_011145  AnaeK_1869  two component, sigma54 specific, transcriptional regulator, Fis family  41.61 
 
 
464 aa  346  4e-94  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2280  two component, sigma54 specific, transcriptional regulator, Fis family  41.61 
 
 
453 aa  345  8e-94  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.620123 
 
 
-
 
NC_007760  Adeh_2009  two component, sigma54 specific, Fis family transcriptional regulator  42.28 
 
 
463 aa  345  8.999999999999999e-94  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2984  two component, sigma54 specific, transcriptional regulator, Fis family  45.29 
 
 
458 aa  345  1e-93  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.826768  n/a   
 
 
-
 
NC_007760  Adeh_3471  two component, sigma54 specific, Fis family transcriptional regulator  40.89 
 
 
489 aa  345  1e-93  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0961  two component, sigma54 specific, Fis family transcriptional regulator  43.27 
 
 
454 aa  344  2e-93  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU2041  sigma-54 dependent DNA-binding response regulator  43.27 
 
 
455 aa  343  5e-93  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_0173  two component, sigma54 specific, transcriptional regulator, Fis family  47.21 
 
 
463 aa  343  5e-93  Ammonifex degensii KC4  Bacteria  normal  0.127235  n/a   
 
 
-
 
NC_007760  Adeh_0922  two component, sigma54 specific, Fis family transcriptional regulator  43.51 
 
 
462 aa  342  1e-92  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.554455  n/a   
 
 
-
 
NC_010814  Glov_2633  two component, sigma54 specific, transcriptional regulator, Fis family  40.09 
 
 
467 aa  340  4e-92  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4257  two component, sigma54 specific, Fis family transcriptional regulator  42.79 
 
 
463 aa  340  4e-92  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2401  two component, sigma54 specific, Fis family transcriptional regulator  41.11 
 
 
449 aa  338  8e-92  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1320  sigma-54 dependent DNA-binding response regulator  42.26 
 
 
460 aa  338  1.9999999999999998e-91  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0789  two component, sigma54 specific, transcriptional regulator, Fis family  43.3 
 
 
448 aa  337  1.9999999999999998e-91  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  39.24 
 
 
456 aa  337  2.9999999999999997e-91  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0616674 
 
 
-
 
NC_008751  Dvul_0168  two component, sigma54 specific, Fis family transcriptional regulator  47.23 
 
 
459 aa  337  2.9999999999999997e-91  Desulfovibrio vulgaris DP4  Bacteria  normal  0.564625  normal  0.730975 
 
 
-
 
NC_013889  TK90_0988  two component, sigma54 specific, transcriptional regulator, Fis family  43.92 
 
 
468 aa  336  5e-91  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_1510  two component, sigma54 specific, Fis family transcriptional regulator  42.09 
 
 
448 aa  335  7e-91  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0965  two component, sigma54 specific, Fis family transcriptional regulator  42.58 
 
 
466 aa  335  1e-90  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.605384  normal 
 
 
-
 
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