More than 300 homologs were found in PanDaTox collection
for query gene Dole_0622 on replicon NC_009943
Organism: Desulfococcus oleovorans Hxd3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009943  Dole_0622  two component transcriptional regulator  100 
 
 
240 aa  495  1e-139  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_0673  two component transcriptional regulator, winged helix family  44.92 
 
 
235 aa  221  6e-57  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.996485  normal 
 
 
-
 
NC_009483  Gura_1334  two component transcriptional regulator  48.09 
 
 
243 aa  221  7e-57  Geobacter uraniireducens Rf4  Bacteria  normal  0.592557  n/a   
 
 
-
 
NC_011146  Gbem_1342  two component transcriptional regulator, winged helix family  45.3 
 
 
234 aa  218  7e-56  Geobacter bemidjiensis Bem  Bacteria  normal  0.0144629  n/a   
 
 
-
 
NC_012918  GM21_2942  two component transcriptional regulator, winged helix family  44.87 
 
 
234 aa  217  1e-55  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_3569  two component transcriptional regulator, winged helix family  46.35 
 
 
235 aa  216  2.9999999999999998e-55  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1291  two component transcriptional regulator  44.64 
 
 
240 aa  213  1.9999999999999998e-54  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000572556  hitchhiker  0.0000375019 
 
 
-
 
NC_002939  GSU1879  DNA-binding response regulator  44.64 
 
 
238 aa  211  7e-54  Geobacter sulfurreducens PCA  Bacteria  decreased coverage  0.000557668  n/a   
 
 
-
 
NC_008609  Ppro_0507  two component transcriptional regulator  44.59 
 
 
236 aa  209  2e-53  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1848  two component transcriptional regulator, winged helix family  44.02 
 
 
236 aa  196  4.0000000000000005e-49  Desulfohalobium retbaense DSM 5692  Bacteria  hitchhiker  0.0065624  normal 
 
 
-
 
NC_007498  Pcar_0768  two component signal transduction response regulator  44.3 
 
 
236 aa  193  2e-48  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000566504  n/a   
 
 
-
 
NC_013061  Phep_3446  response regulator receiver  44.98 
 
 
234 aa  191  7e-48  Pedobacter heparinus DSM 2366  Bacteria  normal  0.664648  normal 
 
 
-
 
NC_013946  Mrub_1402  two component transcriptional regulator, winged helix family  41.7 
 
 
241 aa  189  2.9999999999999997e-47  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.154165 
 
 
-
 
NC_007760  Adeh_0411  two component transcriptional regulator  42.36 
 
 
230 aa  189  4e-47  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4159  two component transcriptional regulator  43.1 
 
 
230 aa  188  7e-47  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.667277  normal  0.0359145 
 
 
-
 
NC_014212  Mesil_2988  two component transcriptional regulator, winged helix family  40 
 
 
256 aa  186  4e-46  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_0440  two component transcriptional regulator, winged helix family  41.92 
 
 
230 aa  181  7e-45  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0439  two component transcriptional regulator, winged helix family  41.92 
 
 
230 aa  180  2e-44  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4168  two component transcriptional regulator  41.45 
 
 
237 aa  168  8e-41  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.426048 
 
 
-
 
NC_012034  Athe_1487  two component transcriptional regulator, winged helix family  39.57 
 
 
232 aa  167  1e-40  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.487145  n/a   
 
 
-
 
NC_004347  SO_4388  DNA-binding response regulator  38.33 
 
 
227 aa  160  1e-38  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  39.48 
 
 
231 aa  160  2e-38  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_009012  Cthe_1394  two component transcriptional regulator  37.93 
 
 
236 aa  158  6e-38  Clostridium thermocellum ATCC 27405  Bacteria  decreased coverage  0.00000024965  n/a   
 
 
-
 
NC_010718  Nther_2903  two component transcriptional regulator, winged helix family  39.65 
 
 
234 aa  157  2e-37  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2629  two component signal transduction response regulator  35.93 
 
 
238 aa  157  2e-37  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1414  two component transcriptional regulator  37 
 
 
235 aa  156  3e-37  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1304  DNA-binding response regulator  37 
 
 
235 aa  156  3e-37  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.18531  n/a   
 
 
-
 
NC_010159  YpAngola_A2763  DNA-binding response regulator  37 
 
 
235 aa  156  3e-37  Yersinia pestis Angola  Bacteria  normal  0.0137809  hitchhiker  0.000236663 
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  39.57 
 
 
236 aa  156  3e-37  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_013440  Hoch_0552  two component transcriptional regulator, winged helix family  37.83 
 
 
226 aa  155  4e-37  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.496663 
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  39.48 
 
 
231 aa  155  4e-37  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_011830  Dhaf_2193  two component transcriptional regulator, winged helix family  38.72 
 
 
237 aa  155  5.0000000000000005e-37  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0620475  n/a   
 
 
-
 
NC_013205  Aaci_2570  two component transcriptional regulator, winged helix family  36.09 
 
 
239 aa  153  2e-36  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_1954  two component transcriptional regulator  35.96 
 
 
229 aa  153  2.9999999999999998e-36  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.000155813  n/a   
 
 
-
 
NC_008009  Acid345_4054  two component transcriptional regulator  36.4 
 
 
226 aa  152  4e-36  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.271916 
 
 
-
 
NC_007413  Ava_1878  two component transcriptional regulator  36.48 
 
 
242 aa  152  5e-36  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.559477 
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  38.86 
 
 
230 aa  152  5e-36  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  38.89 
 
 
234 aa  152  5.9999999999999996e-36  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_014148  Plim_3821  response regulator receiver  37.55 
 
 
264 aa  152  5.9999999999999996e-36  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.169085  n/a   
 
 
-
 
NC_011729  PCC7424_4207  two component transcriptional regulator, winged helix family  36.48 
 
 
247 aa  152  7e-36  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  38.5 
 
 
235 aa  151  8e-36  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  38.05 
 
 
235 aa  151  8e-36  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_013526  Tter_2867  two component transcriptional regulator, winged helix family  38.36 
 
 
233 aa  150  1e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  38.05 
 
 
235 aa  150  1e-35  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_009513  Lreu_0019  two component transcriptional regulator  38.05 
 
 
235 aa  150  1e-35  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  38.05 
 
 
235 aa  150  2e-35  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  38.05 
 
 
235 aa  150  2e-35  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  38.05 
 
 
235 aa  150  2e-35  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  38.05 
 
 
235 aa  150  2e-35  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  38.05 
 
 
235 aa  150  2e-35  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  38.05 
 
 
235 aa  150  2e-35  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  38.05 
 
 
235 aa  150  2e-35  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_013216  Dtox_2625  two component transcriptional regulator, winged helix family  37.39 
 
 
237 aa  150  2e-35  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.00000254862  normal 
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  38.05 
 
 
235 aa  150  2e-35  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_011662  Tmz1t_2259  osmolarity response regulator  34.6 
 
 
257 aa  150  2e-35  Thauera sp. MZ1T  Bacteria  normal  0.0634187  n/a   
 
 
-
 
NC_010512  Bcenmc03_6462  two component transcriptional regulator  33.19 
 
 
249 aa  150  2e-35  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.747199 
 
 
-
 
NC_008531  LEUM_1950  DNA-binding response regulator  36.32 
 
 
235 aa  150  2e-35  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.100456  n/a   
 
 
-
 
NC_014248  Aazo_0581  winged helix family two component transcriptional regulator  36.05 
 
 
242 aa  150  2e-35  'Nostoc azollae' 0708  Bacteria  normal  0.296955  n/a   
 
 
-
 
NC_009487  SaurJH9_1750  two component transcriptional regulator  35.4 
 
 
234 aa  149  3e-35  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_1784  alkaline phosphatase synthesis transcriptional regulatory protein  35.4 
 
 
234 aa  149  3e-35  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.561076  n/a   
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  38.7 
 
 
239 aa  149  3e-35  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_008527  LACR_0444  DNA-binding response regulator  37.07 
 
 
233 aa  149  3e-35  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4665  two component transcriptional regulator, winged helix family  36.21 
 
 
235 aa  149  4e-35  Haliangium ochraceum DSM 14365  Bacteria  normal  0.880727  normal  0.209776 
 
 
-
 
NC_007604  Synpcc7942_1453  two component transcriptional regulator  35.19 
 
 
244 aa  148  6e-35  Synechococcus elongatus PCC 7942  Bacteria  normal  0.952418  normal  0.0249242 
 
 
-
 
NC_009616  Tmel_1838  two component transcriptional regulator  35.5 
 
 
239 aa  148  6e-35  Thermosipho melanesiensis BI429  Bacteria  hitchhiker  0.00000194698  n/a   
 
 
-
 
NC_013205  Aaci_2922  two component transcriptional regulator, winged helix family  39.21 
 
 
230 aa  148  7e-35  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.221617  n/a   
 
 
-
 
NC_002936  DET0135  DNA-binding response regulator  36.84 
 
 
230 aa  148  8e-35  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  36.8 
 
 
239 aa  147  1.0000000000000001e-34  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_004116  SAG0719  DNA-binding response regulator  38.96 
 
 
236 aa  147  1.0000000000000001e-34  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.0951718  n/a   
 
 
-
 
NC_011726  PCC8801_2302  two component transcriptional regulator, winged helix family  36.05 
 
 
243 aa  147  1.0000000000000001e-34  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009953  Sare_4064  two component transcriptional regulator  35.53 
 
 
233 aa  147  1.0000000000000001e-34  Salinispora arenicola CNS-205  Bacteria  normal  0.98903  normal  0.0666639 
 
 
-
 
NC_009380  Strop_3686  response regulator receiver  35.96 
 
 
233 aa  147  1.0000000000000001e-34  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_2353  two component transcriptional regulator, winged helix family  36.05 
 
 
243 aa  147  1.0000000000000001e-34  Cyanothece sp. PCC 8802  Bacteria  normal  0.0794558  normal 
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  36.68 
 
 
236 aa  147  1.0000000000000001e-34  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_008062  Bcen_5598  two component transcriptional regulator  33.91 
 
 
249 aa  147  1.0000000000000001e-34  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.122257  n/a   
 
 
-
 
NC_009012  Cthe_2333  two component transcriptional regulator  36.24 
 
 
232 aa  147  1.0000000000000001e-34  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0904  two component transcriptional regulator, winged helix family  35.04 
 
 
254 aa  147  1.0000000000000001e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.936287  normal  0.32173 
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  36.8 
 
 
239 aa  147  1.0000000000000001e-34  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_010524  Lcho_1895  osmolarity response regulator  35.04 
 
 
244 aa  147  1.0000000000000001e-34  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0546897 
 
 
-
 
NC_008544  Bcen2424_5962  two component transcriptional regulator  33.91 
 
 
249 aa  147  1.0000000000000001e-34  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.0352079 
 
 
-
 
NC_013124  Afer_0558  two component transcriptional regulator, winged helix family  35.11 
 
 
237 aa  147  2.0000000000000003e-34  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_0470  two component transcriptional regulator, winged helix family  38.77 
 
 
239 aa  146  2.0000000000000003e-34  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0260801  normal 
 
 
-
 
NC_007912  Sde_3703  two component transcriptional regulator  37.99 
 
 
232 aa  147  2.0000000000000003e-34  Saccharophagus degradans 2-40  Bacteria  normal  0.230236  normal  0.0884672 
 
 
-
 
NC_011884  Cyan7425_1115  two component transcriptional regulator, winged helix family  35.19 
 
 
243 aa  146  2.0000000000000003e-34  Cyanothece sp. PCC 7425  Bacteria  normal  0.0950226  normal 
 
 
-
 
NC_011898  Ccel_2106  two component transcriptional regulator, winged helix family  34.87 
 
 
238 aa  146  2.0000000000000003e-34  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_1116  DNA-binding response regulator  37.45 
 
 
235 aa  147  2.0000000000000003e-34  Streptococcus thermophilus LMD-9  Bacteria  normal  0.310768  n/a   
 
 
-
 
NC_013757  Gobs_4285  two component transcriptional regulator, winged helix family  37.29 
 
 
238 aa  146  3e-34  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.83647  n/a   
 
 
-
 
NC_008819  NATL1_02061  two-component response regulator  35.86 
 
 
248 aa  146  3e-34  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.540525 
 
 
-
 
NC_002976  SERP2534  DNA-binding response regulator YycF  35.78 
 
 
233 aa  145  4.0000000000000006e-34  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0588  two component transcriptional regulator, winged helix family  36.84 
 
 
226 aa  145  4.0000000000000006e-34  Geobacter lovleyi SZ  Bacteria  normal  0.944339  n/a   
 
 
-
 
NC_009921  Franean1_5311  two component transcriptional regulator  33.89 
 
 
246 aa  145  4.0000000000000006e-34  Frankia sp. EAN1pec  Bacteria  normal  0.554395  normal  0.310406 
 
 
-
 
NC_008312  Tery_0954  two component transcriptional regulator  35.04 
 
 
243 aa  145  5e-34  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0817018 
 
 
-
 
NC_013515  Smon_0737  two component transcriptional regulator, winged helix family  36.91 
 
 
224 aa  145  6e-34  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_007335  PMN2A_1500  two component transcriptional regulator  35.86 
 
 
248 aa  145  7.0000000000000006e-34  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3373  two component transcriptional regulator  35.71 
 
 
238 aa  145  7.0000000000000006e-34  Ruegeria sp. TM1040  Bacteria  normal  0.584151  normal  0.399207 
 
 
-
 
NC_011830  Dhaf_4687  two component transcriptional regulator, winged helix family  34.93 
 
 
230 aa  145  7.0000000000000006e-34  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000000000000280381  n/a   
 
 
-
 
NC_007513  Syncc9902_0308  two component transcriptional regulator  35.44 
 
 
248 aa  144  8.000000000000001e-34  Synechococcus sp. CC9902  Bacteria  normal  0.030574  n/a   
 
 
-
 
NC_013132  Cpin_0693  two component transcriptional regulator, winged helix family  33.78 
 
 
229 aa  144  8.000000000000001e-34  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_09290  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  37.99 
 
 
229 aa  144  8.000000000000001e-34  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3017  two component transcriptional regulator  37.28 
 
 
225 aa  144  9e-34  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
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