More than 300 homologs were found in PanDaTox collection
for query gene Pden_2990 on replicon NC_008687
Organism: Paracoccus denitrificans PD1222



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008687  Pden_2990  two component LuxR family transcriptional regulator  100 
 
 		 223 aa  451  1.0000000000000001e-126  Paracoccus denitrificans PD1222  Bacteria  normal  0.656569  normal  0.240376 
 
 
-
 
NC_008686  Pden_1784  two component LuxR family transcriptional regulator  62.26 
 
 		 224 aa  253  2.0000000000000002e-66  Paracoccus denitrificans PD1222  Bacteria  hitchhiker  0.000422915  normal  1 
 
 
-
 
NC_009485  BBta_2236  two-component LuxR family response regulator  41.92 
 
 		 211 aa  151  8.999999999999999e-36  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.520528  normal  0.548087 
 
 
-
 
NC_011666  Msil_0485  two component transcriptional regulator, LuxR family  39.41 
 
 		 208 aa  150  1e-35  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_011887  Mnod_8027  two component transcriptional regulator, LuxR family  38.92 
 
 		 211 aa  148  6e-35  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.982767  n/a   
 
 
-
 
NC_010505  Mrad2831_3393  two component LuxR family transcriptional regulator  39.2 
 
 		 224 aa  145  5e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.0944476 
 
 
-
 
NC_007925  RPC_1904  two component LuxR family transcriptional regulator  37.06 
 
 		 218 aa  143  3e-33  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0420846  normal  1 
 
 
-
 
NC_011757  Mchl_4917  two component transcriptional regulator, LuxR family  37.06 
 
 		 221 aa  141  7e-33  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_4967  two component transcriptional regulator, LuxR family  37.06 
 
 		 220 aa  141  9e-33  Methylobacterium populi BJ001  Bacteria  normal  0.103677  normal  0.0219916 
 
 
-
 
NC_010172  Mext_4453  response regulator receiver  37.06 
 
 		 229 aa  141  9.999999999999999e-33  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.731843 
 
 
-
 
NC_010511  M446_4923  two component LuxR family transcriptional regulator  41 
 
 		 210 aa  140  9.999999999999999e-33  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_4951  two component transcriptional regulator, LuxR family  39.5 
 
 		 210 aa  140  1.9999999999999998e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.710213  n/a   
 
 
-
 
NC_010725  Mpop_4619  two component transcriptional regulator, LuxR family  38.92 
 
 		 226 aa  136  2e-31  Methylobacterium populi BJ001  Bacteria  normal  0.167951  normal  0.786248 
 
 
-
 
NC_010172  Mext_4137  response regulator receiver  38.92 
 
 		 225 aa  134  9.999999999999999e-31  Methylobacterium extorquens PA1  Bacteria  normal  0.218362  normal  1 
 
 
-
 
NC_011757  Mchl_4505  two component transcriptional regulator, LuxR family  38.92 
 
 		 225 aa  134  9.999999999999999e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.782253  normal  1 
 
 
-
 
NC_010505  Mrad2831_4197  two component LuxR family transcriptional regulator  36.55 
 
 		 230 aa  129  4.0000000000000003e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.182672  normal  0.341651 
 
 
-
 
NC_011758  Mchl_5446  two component transcriptional regulator, LuxR family  37.5 
 
 		 218 aa  124  1e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.26634  normal  1 
 
 
-
 
NC_011894  Mnod_7525  two component transcriptional regulator, LuxR family  34.48 
 
 		 210 aa  124  2e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.588744  n/a   
 
 
-
 
NC_009512  Pput_3091  two component LuxR family transcriptional regulator  38.16 
 
 		 212 aa  121  7e-27  Pseudomonas putida F1  Bacteria  normal  0.425372  normal  1 
 
 
-
 
NC_008781  Pnap_2640  two component LuxR family transcriptional regulator  37.44 
 
 		 205 aa  121  9e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.437778  normal  1 
 
 
-
 
NC_002947  PP_2672  LuxR family DNA-binding response regulator  38.16 
 
 		 212 aa  121  9.999999999999999e-27  Pseudomonas putida KT2440  Bacteria  normal  0.24109  normal  1 
 
 
-
 
NC_010625  Bphy_7047  two component LuxR family transcriptional regulator  35.41 
 
 		 215 aa  119  3.9999999999999996e-26  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.976007 
 
 
-
 
NC_010322  PputGB1_3131  two component LuxR family transcriptional regulator  37.2 
 
 		 212 aa  118  6e-26  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.33361 
 
 
-
 
NC_009485  BBta_5941  two component LuxR family transcriptional regulator  34.67 
 
 		 206 aa  118  7e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.234506  normal  1 
 
 
-
 
NC_008340  Mlg_2722  two component LuxR family transcriptional regulator  34.47 
 
 		 214 aa  117  9.999999999999999e-26  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  0.378798 
 
 
-
 
NC_007948  Bpro_1167  two component LuxR family transcriptional regulator  35.24 
 
 		 213 aa  116  1.9999999999999998e-25  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010676  Bphyt_6235  two component transcriptional regulator, LuxR family  36.06 
 
 		 210 aa  115  6e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.612124 
 
 
-
 
NC_011666  Msil_2271  two component transcriptional regulator, LuxR family  33.99 
 
 		 223 aa  114  7.999999999999999e-25  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_011666  Msil_3144  two component transcriptional regulator, LuxR family  34.29 
 
 		 232 aa  114  1.0000000000000001e-24  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_009485  BBta_6075  two-component response regulator  33.99 
 
 		 216 aa  114  2.0000000000000002e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010625  Bphy_6558  two component LuxR family transcriptional regulator  36.06 
 
 		 210 aa  113  3e-24  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.458284 
 
 
-
 
NC_007404  Tbd_1588  two component LuxR family transcriptional regulator  34.76 
 
 		 215 aa  112  4.0000000000000004e-24  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.731747  normal  0.987016 
 
 
-
 
NC_010510  Mrad2831_5893  two component LuxR family transcriptional regulator  36.68 
 
 		 219 aa  112  6e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.125381 
 
 
-
 
NC_009439  Pmen_1951  two component LuxR family transcriptional regulator  35.96 
 
 		 216 aa  112  6e-24  Pseudomonas mendocina ymp  Bacteria  normal  0.142543  normal  0.70584 
 
 
-
 
NC_010524  Lcho_0901  two component LuxR family transcriptional regulator  37.98 
 
 		 235 aa  112  6e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_010676  Bphyt_5584  two component transcriptional regulator, LuxR family  35.1 
 
 		 215 aa  110  1.0000000000000001e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  0.282667  normal  1 
 
 
-
 
NC_007952  Bxe_B2471  two component LuxR family transcriptional regulator  31.79 
 
 		 220 aa  110  2.0000000000000002e-23  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.55611 
 
 
-
 
NC_007348  Reut_B5451  two component LuxR family transcriptional regulator  33.94 
 
 		 223 aa  109  3e-23  Ralstonia eutropha JMP134  Bacteria  normal  0.761649  n/a   
 
 
-
 
NC_010515  Bcenmc03_5989  two component LuxR family transcriptional regulator  34.93 
 
 		 215 aa  109  3e-23  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  34.93 
 
 		 215 aa  109  3e-23  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  34.93 
 
 		 215 aa  109  3e-23  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal  1 
 
 
-
 
NC_010087  Bmul_5903  two component LuxR family transcriptional regulator  35.41 
 
 		 215 aa  109  4.0000000000000004e-23  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.68975  normal  0.398777 
 
 
-
 
NC_010511  M446_6781  two component LuxR family transcriptional regulator  33.5 
 
 		 212 aa  109  4.0000000000000004e-23  Methylobacterium sp. 4-46  Bacteria  normal  0.156502  normal  1 
 
 
-
 
NC_010086  Bmul_4256  two component LuxR family transcriptional regulator  34.93 
 
 		 215 aa  108  4.0000000000000004e-23  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.282152  normal  1 
 
 
-
 
NC_012912  Dd1591_1895  two component transcriptional regulator, LuxR family  34.98 
 
 		 213 aa  108  5e-23  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_008061  Bcen_4002  two component LuxR family transcriptional regulator  34.93 
 
 		 215 aa  108  5e-23  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_006349  BMAA0703  LuxR family DNA-binding response regulator  34.45 
 
 		 215 aa  108  6e-23  Burkholderia mallei ATCC 23344  Bacteria  normal  0.533722  n/a   
 
 
-
 
NC_010676  Bphyt_6314  two component transcriptional regulator, LuxR family  36.06 
 
 		 216 aa  108  6e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009079  BMA10247_A1725  LuxR family DNA-binding response regulator  34.45 
 
 		 215 aa  108  6e-23  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A0357  two-component response regulator  33.33 
 
 		 210 aa  108  6e-23  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00848176  normal  1 
 
 
-
 
NC_007650  BTH_II1570  LuxR family DNA-binding response regulator  34.45 
 
 		 215 aa  108  6e-23  Burkholderia thailandensis E264  Bacteria  normal  0.17909  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1154  LuxR family DNA-binding response regulator  34.45 
 
 		 215 aa  108  6e-23  Burkholderia pseudomallei 1106a  Bacteria  normal  0.324728  n/a   
 
 
-
 
NC_008835  BMA10229_0760  LuxR family DNA-binding response regulator  34.45 
 
 		 215 aa  108  6e-23  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  35.58 
 
 		 216 aa  108  7.000000000000001e-23  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  34.45 
 
 		 215 aa  108  9.000000000000001e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal  1 
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  34.45 
 
 		 215 aa  108  9.000000000000001e-23  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.329832 
 
 
-
 
NC_011757  Mchl_3594  two component transcriptional regulator, LuxR family  39.7 
 
 		 219 aa  107  1e-22  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.35213  normal  1 
 
 
-
 
NC_012917  PC1_2202  two component transcriptional regulator, LuxR family  33 
 
 		 213 aa  107  1e-22  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009075  BURPS668_A1228  LuxR family DNA-binding response regulator  34.45 
 
 		 215 aa  107  1e-22  Burkholderia pseudomallei 668  Bacteria  normal  0.0904383  n/a   
 
 
-
 
NC_010557  BamMC406_6196  two component LuxR family transcriptional regulator  35.89 
 
 		 215 aa  107  1e-22  Burkholderia ambifaria MC40-6  Bacteria  normal  0.280791  normal  0.522243 
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  34.29 
 
 		 214 aa  107  1e-22  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_010627  Bphy_7764  two component LuxR family transcriptional regulator  34.13 
 
 		 210 aa  106  2e-22  Burkholderia phymatum STM815  Bacteria  normal  0.527093  normal  1 
 
 
-
 
NC_007435  BURPS1710b_A2427  LuxR family DNA-binding response regulator  34.45 
 
 		 282 aa  107  2e-22  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_011894  Mnod_7263  two component transcriptional regulator, LuxR family  38.38 
 
 		 219 aa  107  2e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_0816  two component LuxR family transcriptional regulator  30.88 
 
 		 212 aa  106  3e-22  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.0000419268  normal  1 
 
 
-
 
NC_007948  Bpro_4296  two component LuxR family transcriptional regulator  34.29 
 
 		 214 aa  106  3e-22  Polaromonas sp. JS666  Bacteria  normal  0.891496  normal  1 
 
 
-
 
NC_009656  PSPA7_3314  putative two-component response regulator  35.61 
 
 		 225 aa  106  3e-22  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_013501  Rmar_2227  two component transcriptional regulator, LuxR family  32.86 
 
 		 217 aa  105  4e-22  Rhodothermus marinus DSM 4252  Bacteria  normal  0.632961  n/a   
 
 
-
 
NC_013501  Rmar_1122  two component transcriptional regulator, LuxR family  30.88 
 
 		 234 aa  104  8e-22  Rhodothermus marinus DSM 4252  Bacteria  normal  0.752968  n/a   
 
 
-
 
NC_007947  Mfla_1714  two component LuxR family transcriptional regulator  30.73 
 
 		 213 aa  104  1e-21  Methylobacillus flagellatus KT  Bacteria  normal  0.975164  hitchhiker  0.000785935 
 
 
-
 
NC_008463  PA14_38900  putative two-component response regulator  36.1 
 
 		 225 aa  104  1e-21  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.899747  normal  1 
 
 
-
 
NC_010581  Bind_0304  two component LuxR family transcriptional regulator  32.64 
 
 		 229 aa  103  2e-21  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  0.103244 
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  35.82 
 
 		 214 aa  103  2e-21  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_010524  Lcho_1782  two component LuxR family transcriptional regulator  33 
 
 		 214 aa  103  2e-21  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000000360675 
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  31.58 
 
 		 213 aa  103  3e-21  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal  1 
 
 
-
 
NC_008825  Mpe_A3043  LuxR family DNA binding response regulator  31.22 
 
 		 209 aa  102  3e-21  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_3468  two component transcriptional regulator, LuxR family  37.88 
 
 		 219 aa  103  3e-21  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_7040  two component transcriptional regulator, LuxR family  33.99 
 
 		 217 aa  102  4e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_002977  MCA0777  LuxR family DNA binding response regulator  30.35 
 
 		 215 aa  102  6e-21  Methylococcus capsulatus str. Bath  Bacteria  normal  0.891731  n/a   
 
 
-
 
NC_010571  Oter_1551  two component LuxR family transcriptional regulator  34.58 
 
 		 229 aa  102  6e-21  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.460798 
 
 
-
 
NC_010505  Mrad2831_0320  two component LuxR family transcriptional regulator  33.65 
 
 		 221 aa  102  7e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.15389  normal  1 
 
 
-
 
NC_006368  lpp2699  transmission activator LetA  29.95 
 
 		 219 aa  102  7e-21  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_010622  Bphy_1137  two component LuxR family transcriptional regulator  33.18 
 
 		 214 aa  102  7e-21  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013501  Rmar_1123  two component transcriptional regulator, LuxR family  30.05 
 
 		 242 aa  100  1e-20  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_3060  two component transcriptional regulator, LuxR family  31.25 
 
 		 215 aa  100  1e-20  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_010625  Bphy_5813  two component LuxR family transcriptional regulator  34.45 
 
 		 215 aa  100  1e-20  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.118405 
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  33.03 
 
 		 217 aa  101  1e-20  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_3828  two component transcriptional regulator, LuxR family  32.37 
 
 		 220 aa  100  2e-20  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007614  Nmul_A1336  two component LuxR family transcriptional regulator  34.12 
 
 		 208 aa  100  2e-20  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_010172  Mext_3270  response regulator receiver  38.69 
 
 		 220 aa  100  2e-20  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.336161 
 
 
-
 
NC_011368  Rleg2_4527  two component transcriptional regulator, LuxR family  35.89 
 
 		 223 aa  100  3e-20  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.658241 
 
 
-
 
NC_008825  Mpe_A0478  two-component response regulator  35.2 
 
 		 215 aa  99.4  4e-20  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  0.0760202 
 
 
-
 
NC_007298  Daro_1572  two component LuxR family transcriptional regulator  33.01 
 
 		 218 aa  99.4  4e-20  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.972408 
 
 
-
 
NC_013422  Hneap_1804  two component transcriptional regulator, LuxR family  29 
 
 		 212 aa  99.4  4e-20  Halothiobacillus neapolitanus c2  Bacteria  normal  0.023063  n/a   
 
 
-
 
NC_006369  lpl2571  transmission activator LetA  29.81 
 
 		 219 aa  99  5e-20  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011666  Msil_3829  two component transcriptional regulator, LuxR family  31.58 
 
 		 211 aa  99  5e-20  Methylocella silvestris BL2  Bacteria  n/a    normal  0.026767 
 
 
-
 
NC_007348  Reut_B3619  LuxR response regulator receiver  32.84 
 
 		 219 aa  99  5e-20  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0127  LuxR family DNA-binding response regulator  34.93 
 
 		 215 aa  99  5e-20  Burkholderia pseudomallei 1710b  Bacteria  normal  0.914848  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1551  LuxR family DNA-binding response regulator  34.93 
 
 		 215 aa  99  5e-20  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_009075  BURPS668_A1634  LuxR family DNA-binding response regulator  34.93 
 
 		 215 aa  99  5e-20  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
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