| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_6196 |
|---|
| Symbol | |
|---|
| ID | 6182437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010557 |
|---|
| Strand | - |
|---|
| Start bp | 783070 |
|---|
| End bp | 783717 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641689324 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001816183 |
|---|
| Protein GI | 172065471 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.280791 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.522243 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGGG TACTCATTGC CGACGACCAC GCACTCGTCA GGGACGGCCT GCGGCACATC
CTGCAGAACG CAAGCGGCTT CGCTGTCGCG GGCGAAGCCT GCGACAGTGC TTCGACGATC
GCGCTCGTGC GCGGCACGGA CGCGAACGTG CTTGTGCTCG ACCTGTCGAT GCCCGGCCGA
AACGGCGTCG AGCTCATCAA GCAGATCAGG GACGAGAAGC CGGCGTTGCA TGTCCTCGTG
CTGACGATGC ATGCGGAACA GCAATATGCG GTGCGTGCGT TCCGCGCGGG CGCATCCGGC
TACATGACCA AGGAAAGCGC CAGCGCCGAA CTGGTCGCGG CGCTGACCAA GATCGCGGCT
GGCGGCGTCT ATGTCAGCCT GACCATGGCC GAACAGTTCG CGCAGAGTCT CAACGAGCCG
ACCGATCTCC TGCCGCACCA GCGCCTGTCC GACCGTGAGT TCGAGGTCTT CCGACGCGTT
ACCATCGGCG AGTCGATTTC CGAAATCGCA CAGGCGCTCT GCATCAGCGT CAAGACCGTC
AGCACATACA AGACACGGAT CCTCGAAAAG ATGCAGATGC CGAACGACAC GGCCCTCGTG
CGCTACGCGA TGCGTCACAA GCTGTTCGAC GACCCGGACG AGCTCTGA
|
|---|
| Protein sequence | MIRVLIADDH ALVRDGLRHI LQNASGFAVA GEACDSASTI ALVRGTDANV LVLDLSMPGR
NGVELIKQIR DEKPALHVLV LTMHAEQQYA VRAFRAGASG YMTKESASAE LVAALTKIAA
GGVYVSLTMA EQFAQSLNEP TDLLPHQRLS DREFEVFRRV TIGESISEIA QALCISVKTV
STYKTRILEK MQMPNDTALV RYAMRHKLFD DPDEL
|
|---|
| |