More than 300 homologs were found in PanDaTox collection
for query gene Pden_1784 on replicon NC_008686
Organism: Paracoccus denitrificans PD1222



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008686  Pden_1784  two component LuxR family transcriptional regulator  100 
 
 		 224 aa  446  1.0000000000000001e-124  Paracoccus denitrificans PD1222  Bacteria  hitchhiker  0.000422915  normal  1 
 
 
-
 
NC_008687  Pden_2990  two component LuxR family transcriptional regulator  62.26 
 
 		 223 aa  253  2.0000000000000002e-66  Paracoccus denitrificans PD1222  Bacteria  normal  0.656569  normal  0.240376 
 
 
-
 
NC_007925  RPC_1904  two component LuxR family transcriptional regulator  41.18 
 
 		 218 aa  162  6e-39  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0420846  normal  1 
 
 
-
 
NC_011887  Mnod_8027  two component transcriptional regulator, LuxR family  37.68 
 
 		 211 aa  146  3e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.982767  n/a   
 
 
-
 
NC_011666  Msil_0485  two component transcriptional regulator, LuxR family  38.42 
 
 		 208 aa  144  8.000000000000001e-34  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_010725  Mpop_4619  two component transcriptional regulator, LuxR family  38.46 
 
 		 226 aa  144  2e-33  Methylobacterium populi BJ001  Bacteria  normal  0.167951  normal  0.786248 
 
 
-
 
NC_011757  Mchl_4505  two component transcriptional regulator, LuxR family  38.28 
 
 		 225 aa  142  3e-33  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.782253  normal  1 
 
 
-
 
NC_010172  Mext_4137  response regulator receiver  38.28 
 
 		 225 aa  142  3e-33  Methylobacterium extorquens PA1  Bacteria  normal  0.218362  normal  1 
 
 
-
 
NC_010505  Mrad2831_3393  two component LuxR family transcriptional regulator  37.44 
 
 		 224 aa  141  8e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.0944476 
 
 
-
 
NC_009485  BBta_5941  two component LuxR family transcriptional regulator  39.02 
 
 		 206 aa  140  1.9999999999999998e-32  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.234506  normal  1 
 
 
-
 
NC_010172  Mext_4453  response regulator receiver  37.81 
 
 		 229 aa  138  7.999999999999999e-32  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  0.731843 
 
 
-
 
NC_011757  Mchl_4917  two component transcriptional regulator, LuxR family  37.81 
 
 		 221 aa  137  8.999999999999999e-32  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_4967  two component transcriptional regulator, LuxR family  37.81 
 
 		 220 aa  137  2e-31  Methylobacterium populi BJ001  Bacteria  normal  0.103677  normal  0.0219916 
 
 
-
 
NC_011894  Mnod_4951  two component transcriptional regulator, LuxR family  38.1 
 
 		 210 aa  135  5e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.710213  n/a   
 
 
-
 
NC_009485  BBta_2236  two-component LuxR family response regulator  39.11 
 
 		 211 aa  134  9.999999999999999e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.520528  normal  0.548087 
 
 
-
 
NC_010511  M446_4923  two component LuxR family transcriptional regulator  39.22 
 
 		 210 aa  132  5e-30  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_4197  two component LuxR family transcriptional regulator  37.62 
 
 		 230 aa  130  2.0000000000000002e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.182672  normal  0.341651 
 
 
-
 
NC_011894  Mnod_7525  two component transcriptional regulator, LuxR family  37.44 
 
 		 210 aa  130  2.0000000000000002e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.588744  n/a   
 
 
-
 
NC_011758  Mchl_5446  two component transcriptional regulator, LuxR family  38.38 
 
 		 218 aa  126  3e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.26634  normal  1 
 
 
-
 
NC_010524  Lcho_0901  two component LuxR family transcriptional regulator  37.5 
 
 		 235 aa  125  8.000000000000001e-28  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_007947  Mfla_0816  two component LuxR family transcriptional regulator  35.44 
 
 		 212 aa  124  1e-27  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.0000419268  normal  1 
 
 
-
 
NC_011666  Msil_3144  two component transcriptional regulator, LuxR family  34.47 
 
 		 232 aa  122  4e-27  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  34.95 
 
 		 213 aa  122  5e-27  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal  1 
 
 
-
 
NC_010511  M446_6781  two component LuxR family transcriptional regulator  38.05 
 
 		 212 aa  121  7e-27  Methylobacterium sp. 4-46  Bacteria  normal  0.156502  normal  1 
 
 
-
 
NC_008781  Pnap_2640  two component LuxR family transcriptional regulator  40 
 
 		 205 aa  121  9e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.437778  normal  1 
 
 
-
 
NC_013501  Rmar_1122  two component transcriptional regulator, LuxR family  33.01 
 
 		 234 aa  117  1.9999999999999998e-25  Rhodothermus marinus DSM 4252  Bacteria  normal  0.752968  n/a   
 
 
-
 
NC_013501  Rmar_2227  two component transcriptional regulator, LuxR family  34.26 
 
 		 217 aa  116  3e-25  Rhodothermus marinus DSM 4252  Bacteria  normal  0.632961  n/a   
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  38.65 
 
 		 216 aa  115  3.9999999999999997e-25  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_3828  two component transcriptional regulator, LuxR family  36.23 
 
 		 220 aa  115  3.9999999999999997e-25  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A0478  two-component response regulator  40.4 
 
 		 215 aa  115  6e-25  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  0.0760202 
 
 
-
 
NC_010676  Bphyt_6314  two component transcriptional regulator, LuxR family  38.71 
 
 		 216 aa  115  6.9999999999999995e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008340  Mlg_2722  two component LuxR family transcriptional regulator  33.8 
 
 		 214 aa  115  6.9999999999999995e-25  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  0.378798 
 
 
-
 
NC_008228  Patl_2290  two component LuxR family transcriptional regulator  32.54 
 
 		 215 aa  114  7.999999999999999e-25  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_007952  Bxe_B2471  two component LuxR family transcriptional regulator  34.6 
 
 		 220 aa  114  1.0000000000000001e-24  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.55611 
 
 
-
 
NC_010676  Bphyt_6235  two component transcriptional regulator, LuxR family  35.44 
 
 		 210 aa  114  1.0000000000000001e-24  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.612124 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  32.56 
 
 		 216 aa  113  2.0000000000000002e-24  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_1714  two component LuxR family transcriptional regulator  31.71 
 
 		 213 aa  113  2.0000000000000002e-24  Methylobacillus flagellatus KT  Bacteria  normal  0.975164  hitchhiker  0.000785935 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  34.3 
 
 		 213 aa  113  2.0000000000000002e-24  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013501  Rmar_1123  two component transcriptional regulator, LuxR family  31.75 
 
 		 242 aa  112  4.0000000000000004e-24  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_007948  Bpro_1167  two component LuxR family transcriptional regulator  33.65 
 
 		 213 aa  112  4.0000000000000004e-24  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007948  Bpro_4296  two component LuxR family transcriptional regulator  34.62 
 
 		 214 aa  112  4.0000000000000004e-24  Polaromonas sp. JS666  Bacteria  normal  0.891496  normal  1 
 
 
-
 
NC_002977  MCA0777  LuxR family DNA binding response regulator  33 
 
 		 215 aa  111  8.000000000000001e-24  Methylococcus capsulatus str. Bath  Bacteria  normal  0.891731  n/a   
 
 
-
 
NC_007650  BTH_II1570  LuxR family DNA-binding response regulator  36.71 
 
 		 215 aa  111  8.000000000000001e-24  Burkholderia thailandensis E264  Bacteria  normal  0.17909  n/a   
 
 
-
 
NC_007348  Reut_B5451  two component LuxR family transcriptional regulator  34.26 
 
 		 223 aa  111  1.0000000000000001e-23  Ralstonia eutropha JMP134  Bacteria  normal  0.761649  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2427  LuxR family DNA-binding response regulator  36.84 
 
 		 282 aa  110  1.0000000000000001e-23  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_010625  Bphy_6558  two component LuxR family transcriptional regulator  34.62 
 
 		 210 aa  111  1.0000000000000001e-23  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.458284 
 
 
-
 
NC_006349  BMAA0703  LuxR family DNA-binding response regulator  36.71 
 
 		 215 aa  110  2.0000000000000002e-23  Burkholderia mallei ATCC 23344  Bacteria  normal  0.533722  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1154  LuxR family DNA-binding response regulator  36.71 
 
 		 215 aa  110  2.0000000000000002e-23  Burkholderia pseudomallei 1106a  Bacteria  normal  0.324728  n/a   
 
 
-
 
NC_007511  Bcep18194_B2520  two component LuxR family transcriptional regulator  35.75 
 
 		 214 aa  110  2.0000000000000002e-23  Burkholderia sp. 383  Bacteria  normal  0.943169  normal  0.310419 
 
 
-
 
NC_008835  BMA10229_0760  LuxR family DNA-binding response regulator  36.71 
 
 		 215 aa  110  2.0000000000000002e-23  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009079  BMA10247_A1725  LuxR family DNA-binding response regulator  36.71 
 
 		 215 aa  110  2.0000000000000002e-23  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  33.17 
 
 		 214 aa  110  2.0000000000000002e-23  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_009075  BURPS668_A1228  LuxR family DNA-binding response regulator  36.71 
 
 		 215 aa  109  3e-23  Burkholderia pseudomallei 668  Bacteria  normal  0.0904383  n/a   
 
 
-
 
NC_009483  Gura_0759  two component LuxR family transcriptional regulator  33.8 
 
 		 217 aa  109  3e-23  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  39.61 
 
 		 214 aa  109  4.0000000000000004e-23  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  36.28 
 
 		 215 aa  108  5e-23  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal  1 
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  36.28 
 
 		 215 aa  108  5e-23  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.329832 
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  32.88 
 
 		 217 aa  108  6e-23  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010676  Bphyt_5584  two component transcriptional regulator, LuxR family  37.2 
 
 		 215 aa  108  7.000000000000001e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  0.282667  normal  1 
 
 
-
 
NC_011894  Mnod_7040  two component transcriptional regulator, LuxR family  37.44 
 
 		 217 aa  108  7.000000000000001e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_1406  DNA-binding response regulator  31.58 
 
 		 215 aa  108  9.000000000000001e-23  Colwellia psychrerythraea 34H  Bacteria  normal  0.253896  n/a   
 
 
-
 
NC_010627  Bphy_7764  two component LuxR family transcriptional regulator  33.65 
 
 		 210 aa  108  9.000000000000001e-23  Burkholderia phymatum STM815  Bacteria  normal  0.527093  normal  1 
 
 
-
 
NC_002947  PP_2672  LuxR family DNA-binding response regulator  34.83 
 
 		 212 aa  107  1e-22  Pseudomonas putida KT2440  Bacteria  normal  0.24109  normal  1 
 
 
-
 
NC_010515  Bcenmc03_5989  two component LuxR family transcriptional regulator  36.28 
 
 		 215 aa  107  1e-22  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  36.28 
 
 		 215 aa  107  1e-22  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_010322  PputGB1_3131  two component LuxR family transcriptional regulator  34.83 
 
 		 212 aa  107  1e-22  Pseudomonas putida GB-1  Bacteria  normal  1  normal  0.33361 
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  36.28 
 
 		 215 aa  107  1e-22  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal  1 
 
 
-
 
NC_009512  Pput_3091  two component LuxR family transcriptional regulator  34.83 
 
 		 212 aa  107  1e-22  Pseudomonas putida F1  Bacteria  normal  0.425372  normal  1 
 
 
-
 
NC_009656  PSPA7_0745  putative two-component response regulator  34.78 
 
 		 210 aa  107  2e-22  Pseudomonas aeruginosa PA7  Bacteria  normal  0.536324  n/a   
 
 
-
 
NC_007298  Daro_1572  two component LuxR family transcriptional regulator  34.12 
 
 		 218 aa  107  2e-22  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.972408 
 
 
-
 
NC_008061  Bcen_4002  two component LuxR family transcriptional regulator  36.28 
 
 		 215 aa  107  2e-22  Burkholderia cenocepacia AU 1054  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_07840  putative two-component response regulator  34.3 
 
 		 210 aa  106  2e-22  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  0.0171986 
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  34.88 
 
 		 221 aa  105  5e-22  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_010086  Bmul_4256  two component LuxR family transcriptional regulator  35.75 
 
 		 215 aa  105  6e-22  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.282152  normal  1 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  30.7 
 
 		 216 aa  105  7e-22  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  36.07 
 
 		 233 aa  104  9e-22  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_008463  PA14_38900  putative two-component response regulator  38.35 
 
 		 225 aa  104  9e-22  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.899747  normal  1 
 
 
-
 
NC_011666  Msil_2271  two component transcriptional regulator, LuxR family  34.3 
 
 		 223 aa  104  1e-21  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_011071  Smal_2340  two component transcriptional regulator, LuxR family  36.02 
 
 		 217 aa  104  1e-21  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.273151  normal  1 
 
 
-
 
NC_009656  PSPA7_3314  putative two-component response regulator  36.59 
 
 		 225 aa  104  1e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_2668  two component LuxR family transcriptional regulator  33.33 
 
 		 213 aa  103  2e-21  Pseudomonas mendocina ymp  Bacteria  normal  0.18046  normal  1 
 
 
-
 
NC_007347  Reut_A3419  LuxR response regulator receiver  33.49 
 
 		 231 aa  103  2e-21  Ralstonia eutropha JMP134  Bacteria  normal  0.393456  n/a   
 
 
-
 
NC_007404  Tbd_1588  two component LuxR family transcriptional regulator  34.11 
 
 		 215 aa  103  2e-21  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.731747  normal  0.987016 
 
 
-
 
NC_007948  Bpro_0709  two component LuxR family transcriptional regulator  34.42 
 
 		 224 aa  103  2e-21  Polaromonas sp. JS666  Bacteria  normal  0.421893  normal  1 
 
 
-
 
NC_010087  Bmul_5903  two component LuxR family transcriptional regulator  35.1 
 
 		 215 aa  103  2e-21  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.68975  normal  0.398777 
 
 
-
 
NC_009075  BURPS668_A1634  LuxR family DNA-binding response regulator  35.24 
 
 		 215 aa  102  3e-21  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0127  LuxR family DNA-binding response regulator  35.24 
 
 		 215 aa  102  3e-21  Burkholderia pseudomallei 1710b  Bacteria  normal  0.914848  n/a   
 
 
-
 
NC_007650  BTH_II1247  LuxR family DNA-binding response regulator  36.06 
 
 		 215 aa  103  3e-21  Burkholderia thailandensis E264  Bacteria  normal  0.32702  n/a   
 
 
-
 
NC_007947  Mfla_0945  two component LuxR family transcriptional regulator  31.55 
 
 		 210 aa  102  3e-21  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007947  Mfla_1089  two component LuxR family transcriptional regulator  31.55 
 
 		 210 aa  102  3e-21  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009078  BURPS1106A_A1551  LuxR family DNA-binding response regulator  35.24 
 
 		 215 aa  102  3e-21  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_1895  two component transcriptional regulator, LuxR family  34.63 
 
 		 213 aa  103  3e-21  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_010625  Bphy_7047  two component LuxR family transcriptional regulator  33.65 
 
 		 215 aa  102  3e-21  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.976007 
 
 
-
 
NC_013739  Cwoe_1298  two component transcriptional regulator, LuxR family  37.02 
 
 		 228 aa  102  3e-21  Conexibacter woesei DSM 14684  Bacteria  normal  0.70055  normal  1 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  32.7 
 
 		 221 aa  102  4e-21  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004578  PSPTO_0560  DNA-binding response regulator, LuxR family  33.97 
 
 		 209 aa  102  5e-21  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_010581  Bind_0304  two component LuxR family transcriptional regulator  32.35 
 
 		 229 aa  102  5e-21  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  1  normal  0.103244 
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  31.25 
 
 		 206 aa  102  5e-21  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_007347  Reut_A1216  two component LuxR family transcriptional regulator  37.5 
 
 		 215 aa  102  6e-21  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  35.21 
 
 		 211 aa  102  6e-21  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
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