More than 300 homologs were found in PanDaTox collection
for query gene Mpop_3890 on replicon NC_010725
Organism: Methylobacterium populi BJ001



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010725  Mpop_3890  response regulator receiver protein  100 
 
 		 184 aa  357  4e-98  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.173819 
 
 
-
 
NC_010505  Mrad2831_0401  response regulator receiver protein  73.87 
 
 		 129 aa  164  5e-40  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_6108  response regulator receiver protein  62.24 
 
 		 120 aa  122  3e-27  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.0506844 
 
 
-
 
NC_011887  Mnod_8084  response regulator receiver protein  57 
 
 		 124 aa  122  3e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_2829  response regulator receiver protein  55.05 
 
 		 120 aa  122  4e-27  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_2866  response regulator receiver protein  55.05 
 
 		 120 aa  122  4e-27  Methylobacterium sp. 4-46  Bacteria  normal  0.216907  normal  1 
 
 
-
 
NC_007778  RPB_1362  response regulator receiver domain-containing protein  45.05 
 
 		 130 aa  84.7  8e-16  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.281273  normal  1 
 
 
-
 
NC_007958  RPD_1341  response regulator receiver  44.07 
 
 		 131 aa  84.7  8e-16  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.22844  normal  1 
 
 
-
 
NC_007925  RPC_4054  response regulator receiver domain-containing protein  39.52 
 
 		 136 aa  81.3  0.000000000000008  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009511  Swit_2977  response regulator receiver protein  39.13 
 
 		 208 aa  79.7  0.00000000000002  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  0.286368 
 
 
-
 
NC_007404  Tbd_1743  two component LuxR family transcriptional regulator  37.4 
 
 		 209 aa  78.6  0.00000000000005  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  0.518394 
 
 
-
 
NC_008463  PA14_09690  putative two-component response regulator  44.86 
 
 		 214 aa  78.6  0.00000000000005  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00000807943  normal  1 
 
 
-
 
NC_009428  Rsph17025_0245  response regulator receiver protein  40.91 
 
 		 202 aa  77.8  0.00000000000008  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009719  Plav_2041  response regulator receiver protein  37.21 
 
 		 214 aa  77.4  0.0000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.212509  hitchhiker  0.00400016 
 
 
-
 
NC_007650  BTH_II0317  LuxR family DNA-binding response regulator  39.67 
 
 		 250 aa  76.6  0.0000000000002  Burkholderia thailandensis E264  Bacteria  normal  0.0309445  n/a   
 
 
-
 
NC_008740  Maqu_2095  response regulator receiver protein  36.43 
 
 		 216 aa  76.6  0.0000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A2130  two component LuxR family transcriptional regulator  35.56 
 
 		 207 aa  76.3  0.0000000000003  Methylibium petroleiphilum PM1  Bacteria  normal  0.281977  normal  1 
 
 
-
 
NC_010086  Bmul_5088  two component LuxR family transcriptional regulator  40 
 
 		 241 aa  75.1  0.0000000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  0.685625 
 
 
-
 
NC_008554  Sfum_0582  two component LuxR family transcriptional regulator  33.33 
 
 		 206 aa  74.7  0.0000000000007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  0.812865 
 
 
-
 
NC_009507  Swit_5293  two component LuxR family transcriptional regulator  40.54 
 
 		 203 aa  74.7  0.0000000000008  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_0903  putative two-component response regulator  44.34 
 
 		 212 aa  74.3  0.0000000000008  Pseudomonas aeruginosa PA7  Bacteria  normal  0.96795  n/a   
 
 
-
 
NC_007493  RSP_0907  two component LuxR family transcriptional regulator  40 
 
 		 202 aa  74.3  0.0000000000008  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.285724  n/a   
 
 
-
 
NC_011004  Rpal_4728  response regulator receiver protein  44.57 
 
 		 130 aa  74.3  0.0000000000008  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009511  Swit_0268  two component LuxR family transcriptional regulator  38.24 
 
 		 203 aa  74.3  0.0000000000008  Sphingomonas wittichii RW1  Bacteria  normal  0.0126561  normal  0.200699 
 
 
-
 
NC_009049  Rsph17029_2567  response regulator receiver protein  40 
 
 		 202 aa  74.3  0.0000000000008  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.94208 
 
 
-
 
NC_010338  Caul_2344  two component LuxR family transcriptional regulator  39.64 
 
 		 208 aa  74.3  0.000000000001  Caulobacter sp. K31  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  31.43 
 
 		 476 aa  73.9  0.000000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_010725  Mpop_3891  two component transcriptional regulator, LuxR family  41.96 
 
 		 213 aa  73.2  0.000000000002  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal  0.188997 
 
 
-
 
NC_009620  Smed_4689  two component, sigma54 specific, Fis family transcriptional regulator  37.74 
 
 		 447 aa  73.2  0.000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.338732 
 
 
-
 
NC_011992  Dtpsy_1655  two component transcriptional regulator, LuxR family  34.81 
 
 		 208 aa  73.2  0.000000000002  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_008782  Ajs_2127  two component LuxR family transcriptional regulator  34.81 
 
 		 208 aa  73.2  0.000000000002  Acidovorax sp. JS42  Bacteria  normal  0.583598  normal  0.797665 
 
 
-
 
NC_010515  Bcenmc03_3910  two component LuxR family transcriptional regulator  40.87 
 
 		 210 aa  73.2  0.000000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  0.855973 
 
 
-
 
NC_010505  Mrad2831_0400  two component LuxR family transcriptional regulator  41.07 
 
 		 202 aa  73.2  0.000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.331086  normal  1 
 
 
-
 
NC_008391  Bamb_5346  two component LuxR family transcriptional regulator  40.87 
 
 		 210 aa  73.2  0.000000000002  Burkholderia ambifaria AMMD  Bacteria  normal  0.0593225  normal  0.752943 
 
 
-
 
NC_008543  Bcen2424_3610  two component LuxR family transcriptional regulator  40.87 
 
 		 210 aa  73.2  0.000000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  0.603365  normal  1 
 
 
-
 
NC_007406  Nwi_1027  response regulator receiver  41.76 
 
 		 135 aa  72.8  0.000000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_1342  response regulator FixJ  36.13 
 
 		 205 aa  72.4  0.000000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.400465  normal  1 
 
 
-
 
NC_007964  Nham_1905  response regulator receiver domain-containing protein  38.18 
 
 		 131 aa  72.8  0.000000000003  Nitrobacter hamburgensis X14  Bacteria  normal  0.558841  n/a   
 
 
-
 
NC_010552  BamMC406_3516  two component LuxR family transcriptional regulator  40.87 
 
 		 210 aa  71.6  0.000000000005  Burkholderia ambifaria MC40-6  Bacteria  normal  0.584359  normal  0.0331166 
 
 
-
 
NC_002947  PP_3551  LuxR family DNA-binding response regulator  45 
 
 		 210 aa  71.6  0.000000000005  Pseudomonas putida KT2440  Bacteria  normal  0.178316  normal  1 
 
 
-
 
NC_009512  Pput_2223  response regulator receiver protein  45 
 
 		 210 aa  71.6  0.000000000005  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_2371  two component LuxR family transcriptional regulator  44 
 
 		 209 aa  71.6  0.000000000005  Pseudomonas putida GB-1  Bacteria  normal  0.820742  normal  1 
 
 
-
 
NC_012560  Avin_25360  Response regulator, LuxR family  37.96 
 
 		 246 aa  72  0.000000000005  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_008609  Ppro_3046  response regulator receiver modulated metal dependent phosphohydrolase  37.5 
 
 		 365 aa  72  0.000000000005  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0429754  n/a   
 
 
-
 
NC_007908  Rfer_2210  two component LuxR family transcriptional regulator  32.19 
 
 		 208 aa  71.6  0.000000000006  Rhodoferax ferrireducens T118  Bacteria  normal  0.891166  n/a   
 
 
-
 
NC_010338  Caul_2968  two component LuxR family transcriptional regulator  36.27 
 
 		 207 aa  71.6  0.000000000006  Caulobacter sp. K31  Bacteria  normal  1  normal  0.138 
 
 
-
 
NC_014148  Plim_1719  response regulator receiver  33.83 
 
 		 231 aa  71.2  0.000000000007  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.760885  n/a   
 
 
-
 
NC_008781  Pnap_1779  response regulator receiver protein  31.11 
 
 		 208 aa  71.2  0.000000000008  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.264941  hitchhiker  0.00228897 
 
 
-
 
NC_010681  Bphyt_2166  two component transcriptional regulator, LuxR family  33.9 
 
 		 220 aa  70.9  0.000000000009  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  35.51 
 
 		 455 aa  70.5  0.00000000001  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_007511  Bcep18194_B2505  two component LuxR family transcriptional regulator  39.13 
 
 		 210 aa  70.9  0.00000000001  Burkholderia sp. 383  Bacteria  normal  0.382458  normal  0.897172 
 
 
-
 
NC_009485  BBta_2787  response regulator receiver protein  44.25 
 
 		 134 aa  70.5  0.00000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.058704  normal  0.0692516 
 
 
-
 
NC_007964  Nham_0872  two component LuxR family transcriptional regulator  42.71 
 
 		 210 aa  70.9  0.00000000001  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_010002  Daci_3982  two component LuxR family transcriptional regulator  33.33 
 
 		 216 aa  70.9  0.00000000001  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.0179399 
 
 
-
 
NC_010622  Bphy_0645  two component LuxR family transcriptional regulator  41.84 
 
 		 240 aa  69.7  0.00000000002  Burkholderia phymatum STM815  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_0686  two component LuxR family transcriptional regulator  32.35 
 
 		 203 aa  69.7  0.00000000002  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_3815  response regulator receiver protein  42.45 
 
 		 212 aa  70.1  0.00000000002  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007794  Saro_1578  two component LuxR family transcriptional regulator  37.61 
 
 		 207 aa  69.7  0.00000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.661779  n/a   
 
 
-
 
NC_010172  Mext_3506  response regulator receiver  39.45 
 
 		 202 aa  70.1  0.00000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.32714  normal  1 
 
 
-
 
NC_011757  Mchl_3813  two component transcriptional regulator, LuxR family  39.45 
 
 		 202 aa  70.1  0.00000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011662  Tmz1t_3192  two component transcriptional regulator, LuxR family  38.85 
 
 		 212 aa  69.7  0.00000000002  Thauera sp. MZ1T  Bacteria  normal  0.513085  n/a   
 
 
-
 
NC_009720  Xaut_1743  response regulator receiver protein  38.18 
 
 		 129 aa  69.7  0.00000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  0.961506 
 
 
-
 
NC_009439  Pmen_4294  two component, sigma54 specific, Fis family transcriptional regulator  33.61 
 
 		 461 aa  69.3  0.00000000003  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  0.595978 
 
 
-
 
NC_004311  BRA0042  LuxR family DNA-binding response regulator  33.59 
 
 		 212 aa  68.9  0.00000000003  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
NC_007347  Reut_A1301  LuxR response regulator receiver  32.03 
 
 		 210 aa  69.3  0.00000000003  Ralstonia eutropha JMP134  Bacteria  normal  0.549132  n/a   
 
 
-
 
NC_008048  Sala_2460  two component LuxR family transcriptional regulator  32.77 
 
 		 210 aa  68.9  0.00000000003  Sphingopyxis alaskensis RB2256  Bacteria  normal  1  normal  0.475025 
 
 
-
 
NC_009504  BOV_A0038  LuxR family DNA-binding response regulator  33.59 
 
 		 212 aa  68.9  0.00000000003  Brucella ovis ATCC 25840  Bacteria  normal  1  n/a   
 
 
-
 
NC_011666  Msil_2681  response regulator receiver protein  43.48 
 
 		 121 aa  68.9  0.00000000004  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_011369  Rleg2_3169  two component, sigma54 specific, transcriptional regulator, Fis family  35.64 
 
 		 444 aa  68.6  0.00000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.254755  normal  0.187976 
 
 
-
 
NC_007517  Gmet_1291  two component transcriptional regulator  37.63 
 
 		 240 aa  68.6  0.00000000005  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000572556  hitchhiker  0.0000375019 
 
 
-
 
NC_007643  Rru_A1500  Signal transduction histidine kinase (STHK) with CheB and CheR activity  32.59 
 
 		 1483 aa  68.6  0.00000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_010505  Mrad2831_3276  response regulator receiver protein  40.68 
 
 		 135 aa  68.2  0.00000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008254  Meso_2222  response regulator FixJ  31.08 
 
 		 205 aa  68.2  0.00000000006  Chelativorans sp. BNC1  Bacteria  normal  0.0446915  n/a   
 
 
-
 
NC_007778  RPB_3850  two component LuxR family transcriptional regulator  38.68 
 
 		 209 aa  68.2  0.00000000007  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_6109  two component LuxR family transcriptional regulator  37.27 
 
 		 210 aa  68.2  0.00000000007  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.0504113 
 
 
-
 
NC_007964  Nham_1906  response regulator FixJ  37.17 
 
 		 205 aa  68.2  0.00000000007  Nitrobacter hamburgensis X14  Bacteria  normal  0.700153  n/a   
 
 
-
 
NC_009943  Dole_1364  two component, sigma54 specific, Fis family transcriptional regulator  36.28 
 
 		 485 aa  67.8  0.00000000008  Desulfococcus oleovorans Hxd3  Bacteria  normal  1  n/a   
 
 
-
 
NC_010625  Bphy_5693  two component LuxR family transcriptional regulator  32.03 
 
 		 224 aa  67.8  0.00000000008  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.247452 
 
 
-
 
NC_010505  Mrad2831_1267  response regulator receiver protein  35.34 
 
 		 123 aa  67.8  0.00000000008  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_2788  response regulator FixJ  31.34 
 
 		 205 aa  67.8  0.00000000009  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0210669  normal  0.0766422 
 
 
-
 
NC_007298  Daro_2148  helix-turn-helix, Fis-type  37.17 
 
 		 442 aa  67.8  0.00000000009  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.383237 
 
 
-
 
NC_008752  Aave_0230  two component, sigma54 specific, Fis family transcriptional regulator  35.53 
 
 		 459 aa  67.4  0.0000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009621  Smed_5540  response regulator receiver protein  34.13 
 
 		 226 aa  67  0.0000000001  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.0494649 
 
 
-
 
NC_009483  Gura_3335  two component, sigma-54 specific, Fis family transcriptional regulator  33.9 
 
 		 458 aa  67.4  0.0000000001  Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_2160  two component transcriptional regulator, LuxR family  31.85 
 
 		 210 aa  67  0.0000000001  Variovorax paradoxus S110  Bacteria  normal  0.563306  n/a   
 
 
-
 
NC_011884  Cyan7425_2205  multi-sensor hybrid histidine kinase  39.13 
 
 		 887 aa  67.4  0.0000000001  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  0.188088 
 
 
-
 
NC_008609  Ppro_0710  two component, sigma54 specific, Fis family transcriptional regulator  36.52 
 
 		 456 aa  67.4  0.0000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_009621  Smed_5633  response regulator receiver protein  36.04 
 
 		 218 aa  66.6  0.0000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.938686  normal  0.508699 
 
 
-
 
NC_009439  Pmen_4561  two component, sigma54 specific, Fis family transcriptional regulator  35.59 
 
 		 446 aa  67  0.0000000002  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_1878  two component transcriptional regulator, LuxR family  38.61 
 
 		 208 aa  66.6  0.0000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008752  Aave_2460  two component LuxR family transcriptional regulator  32.09 
 
 		 208 aa  67  0.0000000002  Acidovorax citrulli AAC00-1  Bacteria  normal  0.293905  normal  1 
 
 
-
 
NC_010524  Lcho_1644  two component LuxR family transcriptional regulator  32.59 
 
 		 207 aa  66.6  0.0000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0578076 
 
 
-
 
NC_010338  Caul_0630  response regulator FixJ  38.1 
 
 		 204 aa  66.2  0.0000000002  Caulobacter sp. K31  Bacteria  normal  0.136769  normal  0.239148 
 
 
-
 
NC_007519  Dde_3003  two component Fis family transcriptional regulator  35.51 
 
 		 465 aa  66.6  0.0000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0697126  n/a   
 
 
-
 
NC_007794  Saro_1616  two component LuxR family transcriptional regulator  33.61 
 
 		 218 aa  66.2  0.0000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_007948  Bpro_2674  two component LuxR family transcriptional regulator  28.89 
 
 		 208 aa  66.6  0.0000000002  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007973  Rmet_1194  two component LuxR family transcriptional regulator  31.75 
 
 		 210 aa  66.6  0.0000000002  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00813352  normal  0.892025 
 
 
-
 
NC_011004  Rpal_2400  two component transcriptional regulator, LuxR family  33.1 
 
 		 210 aa  66.6  0.0000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_1282  response regulator receiver protein  35.8 
 
 		 517 aa  66.6  0.0000000002  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00300616  normal  1 
 
 
-
 
NC_009720  Xaut_1744  response regulator receiver protein  31.01 
 
 		 213 aa  65.9  0.0000000003  Xanthobacter autotrophicus Py2  Bacteria  normal  0.933486  normal  0.721753 
 
 
-
 
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