Gene Vapar_2160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_2160 
Symbol 
ID7973847 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp2303110 
End bp2303742 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content64% 
IMG OID644792748 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_002944061 
Protein GI239815151 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.563306 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTTGA TTCCGAAGAA GGGCACTGTC TATGTCGTCG ACGACGACGA AGCCGTGCGA 
GATTCGCTGC AATGGCTGCT CGAAGGCAAG GACTACCGGG TTCGCTGCTT CGATTCGGCC 
GAGTCCTTCC TCTCCCGATA CGACCCGCGC GAAGTCGCCT GTCTGATCGT CGACATCCGC 
ATGGCCGGCA TGACCGGCCT CGAACTGCAG GACCGGCTGA TCGAACGGCG CTCCCCGCTG 
CCCATCGTGG TGATCACCGG CCACGGCGAC GTGCCGATGG CGGTCGACAG CATGAAGAAG 
GGCGCGATGG ATTTCATCCA GAAGCCGTTC AACGACGAGG AACTCGTCAC GCTGGTCGAG 
CGCATGCTCG AGCACGCGCG CGGCGCCTTC ACGCAGCACC AGCAGTCGGC CAGCCGCGAT 
GCGCTGCTGT CCAAGCTCAC CGGCCGCGAG GCCCAGGTGC TCGAGCGCAT CGTCGCCGGC 
CGCCTGAACA AGCAGATTGC CGACGACCTG GGCATCAGCA TCAAGACGGT CGAGGCGCAC 
CGCGCCAACA TCATGGAAAA GCTCAACGCC AACACCGTGG CCGATCTGCT CAAGATCGCA 
CTCGGGCAGG CGGCACCGGC CGCCAAAGCC TAG
 
Protein sequence
MSLIPKKGTV YVVDDDEAVR DSLQWLLEGK DYRVRCFDSA ESFLSRYDPR EVACLIVDIR 
MAGMTGLELQ DRLIERRSPL PIVVITGHGD VPMAVDSMKK GAMDFIQKPF NDEELVTLVE 
RMLEHARGAF TQHQQSASRD ALLSKLTGRE AQVLERIVAG RLNKQIADDL GISIKTVEAH 
RANIMEKLNA NTVADLLKIA LGQAAPAAKA