More than 300 homologs were found in PanDaTox collection
for query gene Mrad2831_0401 on replicon NC_010505
Organism: Methylobacterium radiotolerans JCM 2831



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010505  Mrad2831_0401  response regulator receiver protein  100 
 
 		 129 aa  256  9e-68  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_3890  response regulator receiver protein  73.87 
 
 		 184 aa  165  2e-40  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.173819 
 
 
-
 
NC_011887  Mnod_8084  response regulator receiver protein  58.41 
 
 		 124 aa  132  1.9999999999999998e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_010511  M446_2866  response regulator receiver protein  54.05 
 
 		 120 aa  123  8.000000000000001e-28  Methylobacterium sp. 4-46  Bacteria  normal  0.216907  normal  1 
 
 
-
 
NC_010511  M446_2829  response regulator receiver protein  54.05 
 
 		 120 aa  123  8.000000000000001e-28  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_6108  response regulator receiver protein  58.16 
 
 		 120 aa  117  7.999999999999999e-26  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.0506844 
 
 
-
 
NC_007778  RPB_1362  response regulator receiver domain-containing protein  39.34 
 
 		 130 aa  78.6  0.00000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.281273  normal  1 
 
 
-
 
NC_007958  RPD_1341  response regulator receiver  37.4 
 
 		 131 aa  77.8  0.00000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.22844  normal  1 
 
 
-
 
NC_008740  Maqu_2095  response regulator receiver protein  40.37 
 
 		 216 aa  72  0.000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_007406  Nwi_1027  response regulator receiver  37.4 
 
 		 135 aa  72  0.000000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007925  RPC_4054  response regulator receiver domain-containing protein  37.61 
 
 		 136 aa  71.6  0.000000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009720  Xaut_1743  response regulator receiver protein  35.85 
 
 		 129 aa  71.2  0.000000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  0.961506 
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  37.14 
 
 		 476 aa  70.9  0.000000000006  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_011369  Rleg2_3169  two component, sigma54 specific, transcriptional regulator, Fis family  37.27 
 
 		 444 aa  70.5  0.000000000008  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.254755  normal  0.187976 
 
 
-
 
NC_009943  Dole_2739  two component, sigma54 specific, Fis family transcriptional regulator  38.1 
 
 		 451 aa  69.7  0.00000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.693002  n/a   
 
 
-
 
NC_009511  Swit_0268  two component LuxR family transcriptional regulator  37.61 
 
 		 203 aa  69.3  0.00000000002  Sphingomonas wittichii RW1  Bacteria  normal  0.0126561  normal  0.200699 
 
 
-
 
NC_012850  Rleg_3460  two component, sigma54 specific, transcriptional regulator, Fis family  35.45 
 
 		 444 aa  67.8  0.00000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0376131  normal  1 
 
 
-
 
NC_007651  BTH_I1862  LuxR family DNA-binding response regulator  37.27 
 
 		 212 aa  67.8  0.00000000005  Burkholderia thailandensis E264  Bacteria  normal  0.340696  n/a   
 
 
-
 
NC_009511  Swit_2977  response regulator receiver protein  37.12 
 
 		 208 aa  67.8  0.00000000005  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  0.286368 
 
 
-
 
NC_006348  BMA1723  LuxR family DNA-binding response regulator  37.27 
 
 		 212 aa  67.4  0.00000000007  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0901353  n/a   
 
 
-
 
NC_007434  BURPS1710b_2748  LuxR family DNA-binding response regulator  37.27 
 
 		 212 aa  67.4  0.00000000007  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_009076  BURPS1106A_2670  LuxR family DNA-binding response regulator  37.27 
 
 		 212 aa  67.4  0.00000000007  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_009074  BURPS668_2614  LuxR family DNA-binding response regulator  37.27 
 
 		 212 aa  67.4  0.00000000007  Burkholderia pseudomallei 668  Bacteria  normal  0.37823  n/a   
 
 
-
 
NC_008836  BMA10229_A3087  LuxR family DNA-binding response regulator  37.27 
 
 		 212 aa  67.4  0.00000000007  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009080  BMA10247_1505  LuxR family DNA-binding response regulator  37.27 
 
 		 212 aa  67.4  0.00000000007  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2232  LuxR family DNA-binding response regulator  37.27 
 
 		 212 aa  67.4  0.00000000007  Burkholderia mallei SAVP1  Bacteria  normal  0.97455  n/a   
 
 
-
 
NC_008463  PA14_09690  putative two-component response regulator  43.69 
 
 		 214 aa  67.4  0.00000000007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.00000807943  normal  1 
 
 
-
 
NC_010084  Bmul_1131  two component LuxR family transcriptional regulator  37.86 
 
 		 212 aa  66.2  0.0000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0589444  normal  0.612677 
 
 
-
 
NC_010681  Bphyt_2593  two component transcriptional regulator, LuxR family  35.71 
 
 		 214 aa  66.2  0.0000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.382122  hitchhiker  0.00235574 
 
 
-
 
NC_007510  Bcep18194_A5445  two component LuxR family transcriptional regulator  37.86 
 
 		 212 aa  66.2  0.0000000001  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_5905  two-component response regulator  35.09 
 
 		 462 aa  66.6  0.0000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_010508  Bcenmc03_2157  two component LuxR family transcriptional regulator  37.86 
 
 		 212 aa  66.2  0.0000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_4728  response regulator receiver protein  40.21 
 
 		 130 aa  66.6  0.0000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009620  Smed_4689  two component, sigma54 specific, Fis family transcriptional regulator  35.4 
 
 		 447 aa  66.6  0.0000000001  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.338732 
 
 
-
 
NC_008062  Bcen_5938  two component LuxR family transcriptional regulator  37.86 
 
 		 212 aa  66.2  0.0000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.172889  n/a   
 
 
-
 
NC_008390  Bamb_2176  two component LuxR family transcriptional regulator  37.86 
 
 		 212 aa  66.2  0.0000000001  Burkholderia ambifaria AMMD  Bacteria  normal  0.116055  n/a   
 
 
-
 
NC_008542  Bcen2424_2139  two component LuxR family transcriptional regulator  37.86 
 
 		 212 aa  66.2  0.0000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  1  n/a   
 
 
-
 
NC_010551  BamMC406_2049  two component LuxR family transcriptional regulator  37.86 
 
 		 212 aa  66.2  0.0000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  0.435361  normal  1 
 
 
-
 
NC_007404  Tbd_1743  two component LuxR family transcriptional regulator  37.19 
 
 		 209 aa  65.5  0.0000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  0.518394 
 
 
-
 
NC_007413  Ava_3616  response regulator receiver Signal transduction histidine kinase  34.75 
 
 		 393 aa  65.9  0.0000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159723  normal  0.789101 
 
 
-
 
NC_007498  Pcar_1055  two component signal transduction response regulator  38.32 
 
 		 734 aa  65.5  0.0000000002  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0148851  n/a   
 
 
-
 
NC_007951  Bxe_A1539  two component LuxR family transcriptional regulator  35.71 
 
 		 214 aa  66.2  0.0000000002  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.274992 
 
 
-
 
NC_009428  Rsph17025_0245  response regulator receiver protein  36.36 
 
 		 202 aa  65.9  0.0000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010505  Mrad2831_0400  two component LuxR family transcriptional regulator  39.64 
 
 		 202 aa  66.2  0.0000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.331086  normal  1 
 
 
-
 
NC_008687  Pden_2964  two component, sigma54 specific, Fis family transcriptional regulator  35.9 
 
 		 441 aa  65.9  0.0000000002  Paracoccus denitrificans PD1222  Bacteria  normal  0.0210387  normal  0.108805 
 
 
-
 
NC_009656  PSPA7_0903  putative two-component response regulator  43.69 
 
 		 212 aa  65.5  0.0000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.96795  n/a   
 
 
-
 
NC_007413  Ava_1030  response regulator receiver modulated diguanylate cyclase  37.14 
 
 		 330 aa  65.1  0.0000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  1  normal  0.33399 
 
 
-
 
NC_007493  RSP_0907  two component LuxR family transcriptional regulator  36.36 
 
 		 202 aa  65.1  0.0000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.285724  n/a   
 
 
-
 
NC_010505  Mrad2831_1267  response regulator receiver protein  34.75 
 
 		 123 aa  65.1  0.0000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009952  Dshi_1081  two component  34.19 
 
 		 441 aa  65.1  0.0000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.136641  normal  0.653656 
 
 
-
 
NC_008463  PA14_68250  two-component response regulator  35.09 
 
 		 462 aa  65.5  0.0000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.371358  normal  0.144717 
 
 
-
 
NC_009049  Rsph17029_2567  response regulator receiver protein  36.36 
 
 		 202 aa  65.1  0.0000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  0.94208 
 
 
-
 
NC_008825  Mpe_A2130  two component LuxR family transcriptional regulator  37.04 
 
 		 207 aa  64.7  0.0000000005  Methylibium petroleiphilum PM1  Bacteria  normal  0.281977  normal  1 
 
 
-
 
NC_007964  Nham_1905  response regulator receiver domain-containing protein  38.1 
 
 		 131 aa  64.3  0.0000000005  Nitrobacter hamburgensis X14  Bacteria  normal  0.558841  n/a   
 
 
-
 
NC_013440  Hoch_0018  two component, sigma54 specific, transcriptional regulator, Fis family  39.82 
 
 		 461 aa  64.3  0.0000000005  Haliangium ochraceum DSM 14365  Bacteria  normal  0.709029  normal  0.924426 
 
 
-
 
NC_007964  Nham_0872  two component LuxR family transcriptional regulator  35.48 
 
 		 210 aa  64.3  0.0000000006  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_009719  Plav_2041  response regulator receiver protein  38.38 
 
 		 214 aa  63.9  0.0000000008  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.212509  hitchhiker  0.00400016 
 
 
-
 
NC_010622  Bphy_1472  two component LuxR family transcriptional regulator  34.82 
 
 		 214 aa  63.5  0.0000000009  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.781461 
 
 
-
 
NC_010511  M446_1249  two component, sigma54 specific, Fis family transcriptional regulator  33.33 
 
 		 452 aa  63.5  0.0000000009  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010338  Caul_2968  two component LuxR family transcriptional regulator  37.07 
 
 		 207 aa  63.2  0.000000001  Caulobacter sp. K31  Bacteria  normal  1  normal  0.138 
 
 
-
 
NC_011662  Tmz1t_3192  two component transcriptional regulator, LuxR family  38.53 
 
 		 212 aa  63.5  0.000000001  Thauera sp. MZ1T  Bacteria  normal  0.513085  n/a   
 
 
-
 
NC_007908  Rfer_2210  two component LuxR family transcriptional regulator  35.19 
 
 		 208 aa  63.5  0.000000001  Rhodoferax ferrireducens T118  Bacteria  normal  0.891166  n/a   
 
 
-
 
NC_009485  BBta_2787  response regulator receiver protein  43.81 
 
 		 134 aa  63.2  0.000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.058704  normal  0.0692516 
 
 
-
 
NC_008048  Sala_1458  two component, sigma54 specific, Fis family transcriptional regulator  36.52 
 
 		 445 aa  62.8  0.000000001  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.47036  normal  1 
 
 
-
 
NC_010338  Caul_2344  two component LuxR family transcriptional regulator  36.54 
 
 		 208 aa  62.4  0.000000002  Caulobacter sp. K31  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011992  Dtpsy_1655  two component transcriptional regulator, LuxR family  35.19 
 
 		 208 aa  62.4  0.000000002  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_008782  Ajs_2127  two component LuxR family transcriptional regulator  35.19 
 
 		 208 aa  62.4  0.000000002  Acidovorax sp. JS42  Bacteria  normal  0.583598  normal  0.797665 
 
 
-
 
NC_007519  Dde_3003  two component Fis family transcriptional regulator  36.54 
 
 		 465 aa  62.4  0.000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0697126  n/a   
 
 
-
 
NC_007643  Rru_A1500  Signal transduction histidine kinase (STHK) with CheB and CheR activity  36.27 
 
 		 1483 aa  62.8  0.000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_1850  response regulator receiver protein  34.43 
 
 		 126 aa  62.4  0.000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.549411  normal  1 
 
 
-
 
NC_009507  Swit_5293  two component LuxR family transcriptional regulator  34.58 
 
 		 203 aa  62.4  0.000000002  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008609  Ppro_0710  two component, sigma54 specific, Fis family transcriptional regulator  38.53 
 
 		 456 aa  62.4  0.000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_18020  sigma54-dependent response regulator of C4 dicarboxylate transport, two component; DctD  37.38 
 
 		 446 aa  61.6  0.000000003  Azotobacter vinelandii DJ  Bacteria  normal  0.266513  n/a   
 
 
-
 
NC_007347  Reut_A1301  LuxR response regulator receiver  36.36 
 
 		 210 aa  62  0.000000003  Ralstonia eutropha JMP134  Bacteria  normal  0.549132  n/a   
 
 
-
 
NC_009783  VIBHAR_03422  hypothetical protein  35.79 
 
 		 1128 aa  61.6  0.000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008687  Pden_4405  two component, sigma54 specific, Fis family transcriptional regulator  37.5 
 
 		 448 aa  62  0.000000003  Paracoccus denitrificans PD1222  Bacteria  normal  0.851623  normal  0.211367 
 
 
-
 
NC_007778  RPB_3850  two component LuxR family transcriptional regulator  36.11 
 
 		 209 aa  62  0.000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007802  Jann_2541  two component, sigma54 specific, Fis family transcriptional regulator  34.86 
 
 		 438 aa  61.6  0.000000003  Jannaschia sp. CCS1  Bacteria  normal  0.281957  normal  0.250281 
 
 
-
 
NC_008254  Meso_3571  two component transcriptional regulator  40.74 
 
 		 233 aa  61.6  0.000000003  Chelativorans sp. BNC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009428  Rsph17025_0715  two component, sigma54 specific, Fis family transcriptional regulator  32.46 
 
 		 442 aa  61.6  0.000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0889351  normal  0.39603 
 
 
-
 
NC_007005  Psyr_3995  helix-turn-helix, Fis-type  37.04 
 
 		 444 aa  61.6  0.000000004  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.0385153 
 
 
-
 
NC_013172  Bfae_20650  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  43.04 
 
 		 231 aa  61.2  0.000000004  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0260682  n/a   
 
 
-
 
NC_007406  Nwi_0241  LuxR family transcriptional regulator  29.82 
 
 		 216 aa  61.6  0.000000004  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008781  Pnap_1779  response regulator receiver protein  34.26 
 
 		 208 aa  61.2  0.000000004  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.264941  hitchhiker  0.00228897 
 
 
-
 
NC_010322  PputGB1_4410  two component, sigma54 specific, Fis family transcriptional regulator  36.11 
 
 		 444 aa  61.2  0.000000004  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_3891  two component transcriptional regulator, LuxR family  38.74 
 
 		 213 aa  61.2  0.000000004  Methylobacterium populi BJ001  Bacteria  normal  0.520585  normal  0.188997 
 
 
-
 
NC_008044  TM1040_1461  two component, sigma54 specific, Fis family transcriptional regulator  32.46 
 
 		 445 aa  61.6  0.000000004  Ruegeria sp. TM1040  Bacteria  normal  0.0783973  normal  0.675596 
 
 
-
 
NC_007498  Pcar_2345  two component signal transduction response regulator  32.71 
 
 		 455 aa  60.8  0.000000005  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00459366  n/a   
 
 
-
 
NC_007794  Saro_1616  two component LuxR family transcriptional regulator  33.64 
 
 		 218 aa  61.2  0.000000005  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_4561  two component, sigma54 specific, Fis family transcriptional regulator  37.14 
 
 		 446 aa  61.2  0.000000005  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009512  Pput_4322  two component, sigma54 specific, Fis family transcriptional regulator  35.19 
 
 		 444 aa  61.2  0.000000005  Pseudomonas putida F1  Bacteria  normal  0.713581  normal  1 
 
 
-
 
NC_007298  Daro_2148  helix-turn-helix, Fis-type  37.37 
 
 		 442 aa  60.8  0.000000006  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  0.383237 
 
 
-
 
NC_009621  Smed_5632  response regulator receiver protein  31.25 
 
 		 140 aa  60.8  0.000000006  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  0.653856 
 
 
-
 
NC_009972  Haur_4732  response regulator receiver protein  38.39 
 
 		 123 aa  60.8  0.000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.539442  n/a   
 
 
-
 
NC_012560  Avin_25360  Response regulator, LuxR family  37.5 
 
 		 246 aa  60.8  0.000000006  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_008740  Maqu_2347  two component, sigma54 specific, Fis family transcriptional regulator  39.25 
 
 		 450 aa  60.8  0.000000006  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_013456  VEA_002587  chitin catabolic cascade sensor histidine kinase ChiS  34.74 
 
 		 1111 aa  60.8  0.000000006  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_008340  Mlg_0356  response regulator receiver protein  34.58 
 
 		 121 aa  60.8  0.000000006  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0780111  normal  0.957515 
 
 
-
 
NC_002947  PP_1401  two component, sigma54 specific, transcriptional regulator, Fis family  36.11 
 
 		 444 aa  60.5  0.000000007  Pseudomonas putida KT2440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_2996  LuxR response regulator receiver  33.06 
 
 		 198 aa  60.5  0.000000007  Dechloromonas aromatica RCB  Bacteria  normal  0.437807  normal  1 
 
 
-
 
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