More than 300 homologs were found in PanDaTox collection
for query gene Nham_1905 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007964  Nham_1905  response regulator receiver domain-containing protein  100 
 
 		 131 aa  269  1e-71  Nitrobacter hamburgensis X14  Bacteria  normal  0.558841  n/a   
 
 
-
 
NC_007406  Nwi_1027  response regulator receiver  73.98 
 
 		 135 aa  191  3e-48  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007925  RPC_4054  response regulator receiver domain-containing protein  56.14 
 
 		 136 aa  138  3e-32  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007958  RPD_1341  response regulator receiver  53.85 
 
 		 131 aa  137  7e-32  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.22844  normal  1 
 
 
-
 
NC_007778  RPB_1362  response regulator receiver domain-containing protein  52.14 
 
 		 130 aa  132  9.999999999999999e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.281273  normal  1 
 
 
-
 
NC_011004  Rpal_4728  response regulator receiver protein  54.84 
 
 		 130 aa  129  1.0000000000000001e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_2787  response regulator receiver protein  47.97 
 
 		 134 aa  123  1e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.058704  normal  0.0692516 
 
 
-
 
NC_010505  Mrad2831_3276  response regulator receiver protein  43.2 
 
 		 135 aa  99.4  1e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_2866  response regulator receiver protein  40.17 
 
 		 120 aa  88.6  3e-17  Methylobacterium sp. 4-46  Bacteria  normal  0.216907  normal  1 
 
 
-
 
NC_010511  M446_2829  response regulator receiver protein  40.17 
 
 		 120 aa  88.6  3e-17  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009512  Pput_2871  response regulator receiver protein  35.96 
 
 		 206 aa  84  7e-16  Pseudomonas putida F1  Bacteria  normal  0.313361  normal  0.346414 
 
 
-
 
NC_008752  Aave_2460  two component LuxR family transcriptional regulator  36.22 
 
 		 208 aa  83.6  8e-16  Acidovorax citrulli AAC00-1  Bacteria  normal  0.293905  normal  1 
 
 
-
 
NC_010524  Lcho_1644  two component LuxR family transcriptional regulator  35.48 
 
 		 207 aa  83.6  9e-16  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0578076 
 
 
-
 
NC_012791  Vapar_2160  two component transcriptional regulator, LuxR family  38.6 
 
 		 210 aa  82.8  0.000000000000001  Variovorax paradoxus S110  Bacteria  normal  0.563306  n/a   
 
 
-
 
NC_009507  Swit_5293  two component LuxR family transcriptional regulator  32.76 
 
 		 203 aa  82  0.000000000000002  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010002  Daci_3982  two component LuxR family transcriptional regulator  37.72 
 
 		 216 aa  81.6  0.000000000000003  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.0179399 
 
 
-
 
NC_009720  Xaut_1743  response regulator receiver protein  37.93 
 
 		 129 aa  81.3  0.000000000000004  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  0.961506 
 
 
-
 
NC_011894  Mnod_2118  response regulator receiver protein  41.74 
 
 		 125 aa  80.9  0.000000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_008786  Veis_1921  response regulator receiver protein  38.6 
 
 		 208 aa  80.1  0.000000000000009  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.287441  normal  0.0849999 
 
 
-
 
NC_008782  Ajs_2127  two component LuxR family transcriptional regulator  37.72 
 
 		 208 aa  80.1  0.000000000000009  Acidovorax sp. JS42  Bacteria  normal  0.583598  normal  0.797665 
 
 
-
 
NC_011992  Dtpsy_1655  two component transcriptional regulator, LuxR family  37.72 
 
 		 208 aa  80.1  0.000000000000009  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_008554  Sfum_0582  two component LuxR family transcriptional regulator  36.21 
 
 		 206 aa  79.7  0.00000000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  0.812865 
 
 
-
 
NC_008340  Mlg_1832  two component LuxR family transcriptional regulator  33.06 
 
 		 208 aa  79.7  0.00000000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007948  Bpro_2674  two component LuxR family transcriptional regulator  35 
 
 		 208 aa  79.7  0.00000000000001  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011887  Mnod_8084  response regulator receiver protein  34.78 
 
 		 124 aa  78.6  0.00000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_1779  response regulator receiver protein  35 
 
 		 208 aa  79.3  0.00000000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.264941  hitchhiker  0.00228897 
 
 
-
 
NC_010338  Caul_2460  response regulator receiver protein  33.05 
 
 		 131 aa  79  0.00000000000002  Caulobacter sp. K31  Bacteria  normal  0.732516  normal  0.518565 
 
 
-
 
NC_010511  M446_6108  response regulator receiver protein  41.94 
 
 		 120 aa  78.6  0.00000000000003  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.0506844 
 
 
-
 
NC_011004  Rpal_1519  two component transcriptional regulator, LuxR family  37.5 
 
 		 228 aa  78.6  0.00000000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.444774  n/a   
 
 
-
 
NC_007484  Noc_1701  two component LuxR family transcriptional regulator  31.15 
 
 		 201 aa  77.8  0.00000000000004  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0166117  n/a   
 
 
-
 
NC_008048  Sala_2460  two component LuxR family transcriptional regulator  32.79 
 
 		 210 aa  77.8  0.00000000000005  Sphingopyxis alaskensis RB2256  Bacteria  normal  1  normal  0.475025 
 
 
-
 
NC_007908  Rfer_2210  two component LuxR family transcriptional regulator  34.17 
 
 		 208 aa  77  0.00000000000007  Rhodoferax ferrireducens T118  Bacteria  normal  0.891166  n/a   
 
 
-
 
NC_010505  Mrad2831_3275  response regulator FixJ  35.34 
 
 		 205 aa  77  0.00000000000008  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007973  Rmet_1194  two component LuxR family transcriptional regulator  32.76 
 
 		 210 aa  77  0.00000000000008  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00813352  normal  0.892025 
 
 
-
 
NC_009719  Plav_2041  response regulator receiver protein  34.21 
 
 		 214 aa  76.3  0.0000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.212509  hitchhiker  0.00400016 
 
 
-
 
NC_007650  BTH_II0317  LuxR family DNA-binding response regulator  33.33 
 
 		 250 aa  76.6  0.0000000000001  Burkholderia thailandensis E264  Bacteria  normal  0.0309445  n/a   
 
 
-
 
NC_010505  Mrad2831_2580  response regulator receiver protein  38.26 
 
 		 133 aa  76.3  0.0000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A2130  two component LuxR family transcriptional regulator  35.09 
 
 		 207 aa  76.3  0.0000000000001  Methylibium petroleiphilum PM1  Bacteria  normal  0.281977  normal  1 
 
 
-
 
NC_009485  BBta_2788  response regulator FixJ  32.26 
 
 		 205 aa  75.9  0.0000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0210669  normal  0.0766422 
 
 
-
 
NC_010505  Mrad2831_1267  response regulator receiver protein  30.83 
 
 		 123 aa  75.5  0.0000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007794  Saro_1578  two component LuxR family transcriptional regulator  31.9 
 
 		 207 aa  75.9  0.0000000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.661779  n/a   
 
 
-
 
NC_007492  Pfl01_2459  two component LuxR family transcriptional regulator  37.07 
 
 		 215 aa  75.1  0.0000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009092  Shew_3240  two component LuxR family transcriptional regulator  27.73 
 
 		 207 aa  75.1  0.0000000000003  Shewanella loihica PV-4  Bacteria  normal  1  normal  0.989265 
 
 
-
 
NC_007651  BTH_I1862  LuxR family DNA-binding response regulator  33.62 
 
 		 212 aa  75.1  0.0000000000003  Burkholderia thailandensis E264  Bacteria  normal  0.340696  n/a   
 
 
-
 
NC_008009  Acid345_3714  response regulator receiver protein  29.03 
 
 		 256 aa  75.5  0.0000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.400104  normal  1 
 
 
-
 
NC_006348  BMA1723  LuxR family DNA-binding response regulator  33.62 
 
 		 212 aa  74.7  0.0000000000004  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0901353  n/a   
 
 
-
 
NC_008836  BMA10229_A3087  LuxR family DNA-binding response regulator  33.62 
 
 		 212 aa  74.7  0.0000000000004  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_007434  BURPS1710b_2748  LuxR family DNA-binding response regulator  33.62 
 
 		 212 aa  74.7  0.0000000000004  Burkholderia pseudomallei 1710b  Bacteria  normal  1  n/a   
 
 
-
 
NC_009076  BURPS1106A_2670  LuxR family DNA-binding response regulator  33.62 
 
 		 212 aa  74.7  0.0000000000004  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2232  LuxR family DNA-binding response regulator  33.62 
 
 		 212 aa  74.7  0.0000000000004  Burkholderia mallei SAVP1  Bacteria  normal  0.97455  n/a   
 
 
-
 
NC_009074  BURPS668_2614  LuxR family DNA-binding response regulator  33.62 
 
 		 212 aa  74.7  0.0000000000004  Burkholderia pseudomallei 668  Bacteria  normal  0.37823  n/a   
 
 
-
 
NC_008340  Mlg_1621  two component LuxR family transcriptional regulator  34.82 
 
 		 201 aa  74.7  0.0000000000004  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009080  BMA10247_1505  LuxR family DNA-binding response regulator  33.62 
 
 		 212 aa  74.7  0.0000000000004  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_25360  Response regulator, LuxR family  31.03 
 
 		 246 aa  74.3  0.0000000000005  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_010681  Bphyt_2166  two component transcriptional regulator, LuxR family  32.46 
 
 		 220 aa  74.3  0.0000000000005  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007347  Reut_A1301  LuxR response regulator receiver  31.9 
 
 		 210 aa  73.9  0.0000000000007  Ralstonia eutropha JMP134  Bacteria  normal  0.549132  n/a   
 
 
-
 
NC_007974  Rmet_5310  two component LuxR family transcriptional regulator  37.29 
 
 		 228 aa  73.6  0.0000000000008  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.659396 
 
 
-
 
NC_010551  BamMC406_2049  two component LuxR family transcriptional regulator  33.62 
 
 		 212 aa  73.2  0.000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  0.435361  normal  1 
 
 
-
 
NC_010508  Bcenmc03_2157  two component LuxR family transcriptional regulator  33.62 
 
 		 212 aa  73.2  0.000000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010084  Bmul_1131  two component LuxR family transcriptional regulator  33.62 
 
 		 212 aa  73.6  0.000000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0589444  normal  0.612677 
 
 
-
 
NC_008390  Bamb_2176  two component LuxR family transcriptional regulator  33.62 
 
 		 212 aa  73.2  0.000000000001  Burkholderia ambifaria AMMD  Bacteria  normal  0.116055  n/a   
 
 
-
 
NC_004578  PSPTO_5548  DNA-binding response regulator, LuxR family  31.67 
 
 		 212 aa  72.8  0.000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_5088  LuxR response regulator receiver  31.67 
 
 		 212 aa  73.2  0.000000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009720  Xaut_1552  response regulator receiver protein  38.61 
 
 		 199 aa  73.2  0.000000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007510  Bcep18194_A5445  two component LuxR family transcriptional regulator  33.62 
 
 		 212 aa  73.2  0.000000000001  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_2400  two component transcriptional regulator, LuxR family  35.09 
 
 		 210 aa  72.8  0.000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008542  Bcen2424_2139  two component LuxR family transcriptional regulator  33.62 
 
 		 212 aa  73.2  0.000000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_3890  response regulator receiver protein  38.18 
 
 		 184 aa  73.2  0.000000000001  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.173819 
 
 
-
 
NC_010505  Mrad2831_0400  two component LuxR family transcriptional regulator  34.48 
 
 		 202 aa  72.8  0.000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.331086  normal  1 
 
 
-
 
NC_008062  Bcen_5938  two component LuxR family transcriptional regulator  33.62 
 
 		 212 aa  73.6  0.000000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.172889  n/a   
 
 
-
 
NC_008009  Acid345_3729  two component LuxR family transcriptional regulator  33.91 
 
 		 209 aa  72.4  0.000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010338  Caul_2968  two component LuxR family transcriptional regulator  30.83 
 
 		 207 aa  72  0.000000000003  Caulobacter sp. K31  Bacteria  normal  1  normal  0.138 
 
 
-
 
NC_007298  Daro_3108  LuxR response regulator receiver  31.9 
 
 		 202 aa  71.6  0.000000000003  Dechloromonas aromatica RCB  Bacteria  normal  0.786061  normal  1 
 
 
-
 
NC_007406  Nwi_0241  LuxR family transcriptional regulator  33.91 
 
 		 216 aa  71.6  0.000000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007778  RPB_0181  two component LuxR family transcriptional regulator  33.87 
 
 		 210 aa  71.6  0.000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008740  Maqu_2095  response regulator receiver protein  28.21 
 
 		 216 aa  71.6  0.000000000003  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_008554  Sfum_0943  two component LuxR family transcriptional regulator  36.67 
 
 		 214 aa  71.6  0.000000000004  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010338  Caul_2343  response regulator receiver protein  31.73 
 
 		 138 aa  70.9  0.000000000005  Caulobacter sp. K31  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009719  Plav_2356  response regulator receiver protein  34.96 
 
 		 215 aa  70.9  0.000000000005  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  0.504321 
 
 
-
 
NC_007643  Rru_A1500  Signal transduction histidine kinase (STHK) with CheB and CheR activity  35.04 
 
 		 1483 aa  70.9  0.000000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_014148  Plim_1719  response regulator receiver  29.57 
 
 		 231 aa  70.9  0.000000000006  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.760885  n/a   
 
 
-
 
NC_010338  Caul_2344  two component LuxR family transcriptional regulator  30 
 
 		 208 aa  70.9  0.000000000006  Caulobacter sp. K31  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012853  Rleg_5743  two component transcriptional regulator, LuxR family  36.21 
 
 		 212 aa  70.9  0.000000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011992  Dtpsy_3511  two component transcriptional regulator, LuxR family  31.03 
 
 		 209 aa  70.9  0.000000000006  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_3815  response regulator receiver protein  29.91 
 
 		 212 aa  70.9  0.000000000006  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009379  Pnuc_0732  response regulator receiver protein  33.94 
 
 		 215 aa  70.1  0.000000000009  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.298469  n/a   
 
 
-
 
NC_009952  Dshi_2568  response regulator protein  30.89 
 
 		 214 aa  70.1  0.000000000009  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0467638  hitchhiker  0.0000000292578 
 
 
-
 
NC_011666  Msil_1825  two component transcriptional regulator, LuxR family  29.91 
 
 		 205 aa  69.7  0.00000000001  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0736095 
 
 
-
 
NC_008825  Mpe_A0811  two-component response regulator  32.71 
 
 		 209 aa  69.7  0.00000000001  Methylibium petroleiphilum PM1  Bacteria  normal  0.184612  normal  1 
 
 
-
 
NC_010681  Bphyt_2593  two component transcriptional regulator, LuxR family  31.86 
 
 		 214 aa  69.7  0.00000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.382122  hitchhiker  0.00235574 
 
 
-
 
NC_007925  RPC_4053  response regulator FixJ  29.41 
 
 		 205 aa  69.7  0.00000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007951  Bxe_A1539  two component LuxR family transcriptional regulator  31.86 
 
 		 214 aa  69.7  0.00000000001  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.274992 
 
 
-
 
NC_007964  Nham_1906  response regulator FixJ  31.93 
 
 		 205 aa  69.7  0.00000000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.700153  n/a   
 
 
-
 
NC_010086  Bmul_5088  two component LuxR family transcriptional regulator  29.82 
 
 		 241 aa  69.3  0.00000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  0.685625 
 
 
-
 
NC_007404  Tbd_1743  two component LuxR family transcriptional regulator  31.03 
 
 		 209 aa  69.3  0.00000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  0.518394 
 
 
-
 
NC_007484  Noc_2445  two component LuxR family transcriptional regulator  29.51 
 
 		 208 aa  68.9  0.00000000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  1  n/a   
 
 
-
 
NC_007511  Bcep18194_B2505  two component LuxR family transcriptional regulator  29.82 
 
 		 210 aa  69.3  0.00000000002  Burkholderia sp. 383  Bacteria  normal  0.382458  normal  0.897172 
 
 
-
 
NC_010511  M446_6109  two component LuxR family transcriptional regulator  30.83 
 
 		 210 aa  68.9  0.00000000002  Methylobacterium sp. 4-46  Bacteria  normal  1  normal  0.0504113 
 
 
-
 
NC_008009  Acid345_0845  response regulator receiver protein  36.21 
 
 		 183 aa  69.3  0.00000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_3713  two component LuxR family transcriptional regulator  37.96 
 
 		 208 aa  68.9  0.00000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.222966  normal  1 
 
 
-
 
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