| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1644 |
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| Symbol | |
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| ID | 6161677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1748835 |
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| End bp | 1749458 |
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| Gene Length | 624 bp |
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| Protein Length | 207 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641664398 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001790676 |
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| Protein GI | 171058327 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4566] Response regulator |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.0578076 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCCTGA TTCCGAAAAA GGGGACGGTC TATATCGTCG ACGATGACGA AGCCGTCAGA
GATTCGCTGC AGTGGCTGCT CGAGGGCAAG GACTATCGCG TCAAGTGCTT CGACTCGGCC
GAGGCCTTCC TGTCGCGCTT CGACCCGCGC GAGGTGGCCT GCCTGATCGC CGACATCCGC
ATGGACGGCA TGACCGGCCT CGAACTGCAG GATCGCCTGC TCGAGCGCAA GAGCCCGCTG
CCGATCGTCT TCATCACCGG CCACGGTGAC GTGCCGATGG CGGTCACGAC GATGAAGAAG
GGCGCCGAGG ACTTCATCGA GAAACCCTTC AAGGAAGACG AGCTGGTGAC CCTGGTCGAG
CGCATGCTCG ACCGCGCCCG CAGCAGCTTC TCGCACTACC AGGAACAGGC CAGCCGCGAC
GCCCTGCTGG CGCGCCTGAC CACCCGCGAG GCCCAGGTGC TCGAGCGCAT CGTCGCCGGC
CGTCTCAACA AGCAGATCGC CGACGACCTG GGCATCAGCA TCAAGACGGT CGAGGCGCAC
CGCGCCAACA TCATGGAAAA GCTCAACGCC AACACGGTGG CCGACCTGCT CAAGATCGCG
CTCGGAGCCG CCGCCAAGGT CTGA
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| Protein sequence | MSLIPKKGTV YIVDDDEAVR DSLQWLLEGK DYRVKCFDSA EAFLSRFDPR EVACLIADIR
MDGMTGLELQ DRLLERKSPL PIVFITGHGD VPMAVTTMKK GAEDFIEKPF KEDELVTLVE
RMLDRARSSF SHYQEQASRD ALLARLTTRE AQVLERIVAG RLNKQIADDL GISIKTVEAH
RANIMEKLNA NTVADLLKIA LGAAAKV
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