Gene Saro_1616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_1616 
Symbol 
ID3918724 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand+ 
Start bp1686073 
End bp1686729 
Gene Length657 bp 
Protein Length218 aa 
Translation table11 
GC content61% 
IMG OID640444356 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_496890 
Protein GI87199633 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGACA AGAAGCTGGT CCACGTCGTC GACGACGAGG AAGGCGTGCG GCGCTCGCTG 
GATTTCCTGC TGCGCACGAC GGGGTACAAC GTCCAGTGCT GGATCGATGG CGATACCTTT 
CTCAAGGATG TGGACGGTTC GGTTCCGGCG TGCGTGCTGA TGGATATCCG CATGCCCGGG 
TCATCGGGGC TGGAGATCCA GGAACAGATG CCCGAGCATG GACTGGACTT TCCGGTCATC 
GTGCTTTCGG GCCATGGAGA CATTCACTCG GCGGTAAGGG CGATGAAGGC TGGCGCAGTC 
GATTTCGTCG AGAAGCCGTT CAGTCGGGAC AAGCTGCTCG ATGCCATCGC GAATGCTTTC 
CAGCGCGTCG AGAACGGCGA GGCGGCGCGT GAGAAGGCGG TATCGGCGCA GACCCTGGTA 
GCAAGGCTGA CCTCGCGCGA GCAGGAGGTG CTCGAGGGGC TCGCCTGCGG ATATCCGAAC 
AAGACCATCG CCTACGATCT CGGTATCAGT CCCCGTACGG TCGAGGTTTA TCGCGCCAAT 
ATCATGACCA AGCTCAAGGT TCCCAGCTTT GCCGATGCCC TGCGCATTGC GTTCACGGCC 
GGGCTTGGAA TGGAAGCGCA GTGGCGCAAG GAGCACTCCA CCCAGCGGCT CGGCTGA
 
Protein sequence
MTDKKLVHVV DDEEGVRRSL DFLLRTTGYN VQCWIDGDTF LKDVDGSVPA CVLMDIRMPG 
SSGLEIQEQM PEHGLDFPVI VLSGHGDIHS AVRAMKAGAV DFVEKPFSRD KLLDAIANAF 
QRVENGEAAR EKAVSAQTLV ARLTSREQEV LEGLACGYPN KTIAYDLGIS PRTVEVYRAN 
IMTKLKVPSF ADALRIAFTA GLGMEAQWRK EHSTQRLG