Gene Rpal_1878 details

Gene Information

• Locus tag: Rpal_1878
• ID: 6409537
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 2021682
• End bp: 2022308
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 642711766
• Product: two component transcriptional regulator, LuxR family
• Protein accession: YP_001990879
• Protein GI: 192290274
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG4566] Response regulator

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGAAC AAGCAGCGGG AGGAGAAGTC TTCGTCGTCG ACGACGATCC GGCGGTGCGC 
GAGACACTGT CGATCGTGCT GTCGGCGGCG GGCTATCAGG TGATTTGCTT CGCCGATGGT 
GAATCGTTGC TTGCTGTCGC GCGCAGCCGC AGCCCGGCCT GCATCCTGCT CGACGTTCAC 
ATTCCCGGCC GGTCGGGTCT CGACATTCTG GCGGAGCTGC ACGCCGAGGA TTATCCGGCG 
CCGATCTTCA TGATCTCGGG TAAAGGCGAC ATCGCGATGG CCGTCAACGC CATCAAGAAT 
GGCGCGCTCG ACTTCATCGA GAAGCCGTTC CGCGGCAAGG AGATCGTGTC ACGGGTGGAA 
GAGGCGATCG AGGCCTTCTC GCGGCGGCGC GATGCCGGGC AGGGCAGCAA GGCGCCGTCC 
TATAACTTCC CCGGCAAGGA GCCGCTGACG CTGCGCGAGC GCGAAGTGCT CGAGCTGTTC 
TCGGCCGGTA ACACCAACAA GGAAGCCGGC CGCCAGCTCG GGATCAGCCC GCGCACCATC 
GAGTATCACC GCGCCAACAT CATGAAGAAG CTCGGCGCCC GCAATGCCAC CGATCTGGTG 
CGCATCGTGA TGACGGCGCC GAAGTAA 

 

Protein sequence

MNEQAAGGEV FVVDDDPAVR ETLSIVLSAA GYQVICFADG ESLLAVARSR SPACILLDVH 
IPGRSGLDIL AELHAEDYPA PIFMISGKGD IAMAVNAIKN GALDFIEKPF RGKEIVSRVE 
EAIEAFSRRR DAGQGSKAPS YNFPGKEPLT LREREVLELF SAGNTNKEAG RQLGISPRTI 
EYHRANIMKK LGARNATDLV RIVMTAPK