More than 300 homologs were found in PanDaTox collection
for query gene Lcho_3585 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_3585  Crp/FNR family transcriptional regulator  100 
 
 
215 aa  429  1e-119  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.921585 
 
 
-
 
NC_011992  Dtpsy_2451  transcriptional regulator, Crp/Fnr family  35.68 
 
 
207 aa  95.1  7e-19  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3105  Crp/FNR family transcriptional regulator  35.68 
 
 
207 aa  95.1  7e-19  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3168  Crp/FNR family transcriptional regulator  35 
 
 
207 aa  92.8  3e-18  Rhodoferax ferrireducens T118  Bacteria  normal  0.202978  n/a   
 
 
-
 
NC_011761  AFE_0857  transcriptional regulator, Crp/Fnr family  29.7 
 
 
229 aa  84.3  0.000000000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_0981  transcriptional regulator, Crp/Fnr family  29.7 
 
 
246 aa  84.7  0.000000000000001  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.0154476 
 
 
-
 
NC_008786  Veis_4874  CRP/FNR family transcriptional regulator  31.44 
 
 
207 aa  82  0.000000000000006  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.58229 
 
 
-
 
NC_011761  AFE_1658  transcriptional regulator, Crp/Fnr family  29.47 
 
 
222 aa  82  0.000000000000007  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.365354  n/a   
 
 
-
 
NC_011206  Lferr_1356  transcriptional regulator, Crp/Fnr family  29.47 
 
 
222 aa  82  0.000000000000007  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  31.05 
 
 
224 aa  76.3  0.0000000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2130  CRP/FNR family transcriptional regulator  33.71 
 
 
192 aa  75.9  0.0000000000005  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.451165 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  30.43 
 
 
227 aa  75.1  0.0000000000008  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_3443  transcriptional regulator, Crp/Fnr family  30.3 
 
 
229 aa  73.6  0.000000000002  Acidovorax ebreus TPSY  Bacteria  normal  0.12986  n/a   
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  27.23 
 
 
243 aa  72.8  0.000000000003  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  30.11 
 
 
225 aa  73.2  0.000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  29.67 
 
 
223 aa  72  0.000000000007  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  28.02 
 
 
224 aa  69.3  0.00000000004  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_006348  BMA0619  cyclic nucleotide-binding domain-containing protein  24.88 
 
 
229 aa  68.2  0.00000000008  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2817  cyclic nucleotide-binding domain-containing protein  24.88 
 
 
229 aa  68.2  0.00000000008  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_2695  cyclic nucleotide-binding protein  24.88 
 
 
229 aa  68.2  0.00000000008  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  23.74 
 
 
227 aa  68.6  0.00000000008  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1706  cyclic nucleotide-binding protein  24.88 
 
 
230 aa  68.2  0.00000000009  Burkholderia mallei NCTC 10247  Bacteria  normal  0.450772  n/a   
 
 
-
 
NC_008836  BMA10229_A2895  cyclic nucleotide-binding domain-containing protein  24.88 
 
 
230 aa  68.2  0.00000000009  Burkholderia mallei NCTC 10229  Bacteria  normal  0.869141  n/a   
 
 
-
 
NC_009076  BURPS1106A_2752  cyclic nucleotide-binding protein  24.88 
 
 
230 aa  68.2  0.00000000009  Burkholderia pseudomallei 1106a  Bacteria  normal  0.339389  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2392  cyclic nucleotide-binding domain-containing protein  24.88 
 
 
230 aa  68.2  0.00000000009  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1801  cyclic nucleotide-binding domain-containing protein  24.88 
 
 
229 aa  67.8  0.0000000001  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  25.62 
 
 
232 aa  67  0.0000000002  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
NC_010505  Mrad2831_2595  Crp/FNR family transcriptional regulator  28.35 
 
 
251 aa  66.2  0.0000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.396823  normal 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  24.27 
 
 
227 aa  66.6  0.0000000003  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_011662  Tmz1t_4014  transcriptional regulator, Crp/Fnr family  28.95 
 
 
233 aa  66.6  0.0000000003  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3466  regulator of Biofilm formation Fnr Family  26.32 
 
 
235 aa  66.2  0.0000000004  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  30.39 
 
 
254 aa  63.5  0.000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  24.88 
 
 
227 aa  63.2  0.000000003  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_007575  Suden_1312  CRP/FNR family transcriptional regulator  22.29 
 
 
209 aa  63.2  0.000000003  Sulfurimonas denitrificans DSM 1251  Bacteria  decreased coverage  0.000433355  n/a   
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  23.47 
 
 
236 aa  63.2  0.000000003  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  24.88 
 
 
352 aa  62.8  0.000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  24.88 
 
 
227 aa  62.8  0.000000004  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  26.96 
 
 
252 aa  62.4  0.000000004  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  25.82 
 
 
229 aa  62.8  0.000000004  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  26.98 
 
 
224 aa  62.4  0.000000005  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2478  CRP/FNR family transcriptional regulator  28.5 
 
 
249 aa  62.4  0.000000005  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.651433 
 
 
-
 
NC_008261  CPF_1250  Crp/FNR family transcriptional regulator  23 
 
 
236 aa  62.4  0.000000006  Clostridium perfringens ATCC 13124  Bacteria  normal  0.403908  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  28.92 
 
 
226 aa  62  0.000000006  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  27.14 
 
 
236 aa  62  0.000000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  24.3 
 
 
229 aa  62  0.000000007  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  25.51 
 
 
231 aa  60.8  0.00000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  28.57 
 
 
226 aa  60.1  0.00000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  25 
 
 
249 aa  60.5  0.00000002  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  25.52 
 
 
229 aa  60.1  0.00000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  26.58 
 
 
229 aa  60.1  0.00000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  21.26 
 
 
225 aa  60.1  0.00000003  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0749  Crp/FNR family transcriptional regulator  29.77 
 
 
242 aa  59.7  0.00000003  Burkholderia xenovorans LB400  Bacteria  normal  0.887641  normal  0.079497 
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  26.51 
 
 
250 aa  59.3  0.00000004  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  26.51 
 
 
250 aa  59.3  0.00000004  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  26.51 
 
 
250 aa  59.3  0.00000004  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  23.23 
 
 
226 aa  59.3  0.00000004  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  26.51 
 
 
250 aa  59.3  0.00000004  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  26.51 
 
 
250 aa  59.3  0.00000004  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  29.47 
 
 
220 aa  58.9  0.00000006  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  26.27 
 
 
249 aa  58.5  0.00000007  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_009802  CCC13826_1550  protein YieJ  22.34 
 
 
212 aa  58.5  0.00000007  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  23.9 
 
 
227 aa  58.5  0.00000007  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_010571  Oter_2867  Crp/FNR family transcriptional regulator  25.59 
 
 
241 aa  58.5  0.00000007  Opitutus terrae PB90-1  Bacteria  normal  0.343371  normal  0.792405 
 
 
-
 
NC_003296  RS02297  transcription regulator protein  26.34 
 
 
225 aa  58.2  0.00000008  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_007643  Rru_A1622  Crp/FNR family transcriptional regulator  27.62 
 
 
259 aa  58.2  0.00000008  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.366469  n/a   
 
 
-
 
NC_009953  Sare_4762  Crp/FNR family transcriptional regulator  31.02 
 
 
225 aa  58.5  0.00000008  Salinispora arenicola CNS-205  Bacteria  normal  0.900483  hitchhiker  0.0000929699 
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  26.11 
 
 
250 aa  58.2  0.00000009  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_010524  Lcho_4099  Crp/FNR family transcriptional regulator  25.89 
 
 
237 aa  57.8  0.0000001  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00000000655046 
 
 
-
 
NC_003910  CPS_1996  Crp/FNR family transcriptional regulator  26.94 
 
 
261 aa  57.4  0.0000001  Colwellia psychrerythraea 34H  Bacteria  normal  0.249085  n/a   
 
 
-
 
NC_009380  Strop_4322  cyclic nucleotide-binding  30.48 
 
 
225 aa  58.2  0.0000001  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0230513 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  26.11 
 
 
224 aa  57.4  0.0000002  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  26.6 
 
 
224 aa  56.6  0.0000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  19.9 
 
 
226 aa  57.4  0.0000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  23.81 
 
 
230 aa  57.4  0.0000002  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2638  transcriptional regulator, Crp/Fnr family  26.84 
 
 
222 aa  57.4  0.0000002  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2132  transcriptional regulator, Crp/Fnr family  27.1 
 
 
293 aa  56.6  0.0000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.263338  n/a   
 
 
-
 
NC_012850  Rleg_3301  transcriptional regulator, Crp/Fnr family  27.57 
 
 
227 aa  56.2  0.0000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.306356 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  26.19 
 
 
231 aa  56.6  0.0000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_007912  Sde_0755  cAMP-regulatory protein  24.14 
 
 
211 aa  56.6  0.0000003  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.276204 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  25.52 
 
 
228 aa  56.6  0.0000003  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  27.36 
 
 
250 aa  56.2  0.0000004  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  22.33 
 
 
227 aa  56.2  0.0000004  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  24.63 
 
 
250 aa  56.2  0.0000004  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  27.55 
 
 
222 aa  55.8  0.0000005  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  27.78 
 
 
248 aa  55.8  0.0000005  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  21.56 
 
 
236 aa  55.8  0.0000005  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008527  LACR_1045  Crp-like transcriptional regulator  25.12 
 
 
229 aa  55.8  0.0000005  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.000241394  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  28.34 
 
 
225 aa  55.8  0.0000005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  26.11 
 
 
250 aa  55.5  0.0000006  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  27.31 
 
 
248 aa  55.5  0.0000007  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  27.87 
 
 
224 aa  55.5  0.0000007  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_008009  Acid345_3455  Crp/FNR family transcriptional regulator  24.08 
 
 
237 aa  55.1  0.0000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.063385 
 
 
-
 
NC_012857  Rpic12D_3583  transcriptional regulator, Crp/Fnr family  24.24 
 
 
225 aa  55.1  0.0000009  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4660  transcriptional regulator, Crp/Fnr family  24.24 
 
 
225 aa  55.1  0.0000009  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  28.65 
 
 
224 aa  55.1  0.0000009  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  24.64 
 
 
225 aa  54.3  0.000001  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2459  Crp/FNR family transcriptional regulator  27.57 
 
 
235 aa  54.7  0.000001  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.0000341213 
 
 
-
 
NC_007298  Daro_3322  cyclic nucleotide-binding  23.94 
 
 
495 aa  54.7  0.000001  Dechloromonas aromatica RCB  Bacteria  normal  hitchhiker  0.000319874 
 
 
-
 
NC_007958  RPD_1522  cyclic nucleotide-binding  25.48 
 
 
241 aa  54.3  0.000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.500349  normal  0.967279 
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  25.81 
 
 
249 aa  54.7  0.000001  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
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