More than 300 homologs were found in PanDaTox collection
for query gene CPS_4926 on replicon NC_003910
Organism: Colwellia psychrerythraea 34H



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003910  CPS_4926  merR family DNA-binding response regulator  100 
 
 
192 aa  394  1e-109  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1619  DNA-binding response regulator  41.67 
 
 
185 aa  175  3e-43  Colwellia psychrerythraea 34H  Bacteria  normal  0.208637  n/a   
 
 
-
 
NC_003910  CPS_1938  excisionase family DNA-binding response regulator  37.84 
 
 
190 aa  130  1.0000000000000001e-29  Colwellia psychrerythraea 34H  Bacteria  normal  0.440271  n/a   
 
 
-
 
NC_007348  Reut_B5042  excisionase/Xis, DNA-binding  32.58 
 
 
198 aa  99.4  3e-20  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE0855  DNA-binding response regulator  28.04 
 
 
189 aa  83.6  0.000000000000002  Treponema denticola ATCC 35405  Bacteria  normal  0.0365807  n/a   
 
 
-
 
NC_014148  Plim_2544  DNA binding domain protein, excisionase family  27.03 
 
 
264 aa  82.8  0.000000000000003  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0361834  n/a   
 
 
-
 
NC_011898  Ccel_1894  sporulation transcriptional activator Spo0A  31.54 
 
 
281 aa  70.9  0.00000000001  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000000258911  n/a   
 
 
-
 
NC_008228  Patl_1537  response regulator receiver protein  29.9 
 
 
272 aa  69.7  0.00000000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_3087  response regulator receiver protein  30.71 
 
 
269 aa  69.7  0.00000000002  Clostridium thermocellum ATCC 27405  Bacteria  unclonable  0.000000000156547  n/a   
 
 
-
 
NC_010424  Daud_1615  response regulator receiver protein  31.15 
 
 
256 aa  70.5  0.00000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0091  PAS/PAC sensor hybrid histidine kinase  24.53 
 
 
930 aa  68.6  0.00000000005  Polaromonas naphthalenivorans CJ2  Bacteria  hitchhiker  0.00954137  normal  0.993222 
 
 
-
 
NC_008789  Hhal_2151  Hpt sensor hybrid histidine kinase  34.48 
 
 
963 aa  68.2  0.00000000008  Halorhodospira halophila SL1  Bacteria  normal  0.614764  n/a   
 
 
-
 
NC_011891  A2cp1_1223  response regulator receiver protein  31.4 
 
 
132 aa  67.8  0.00000000009  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3553  response regulator receiver  30.08 
 
 
384 aa  67.8  0.00000000009  Dechloromonas aromatica RCB  Bacteria  normal  0.739627  normal 
 
 
-
 
NC_007760  Adeh_1095  response regulator receiver domain-containing protein  31.4 
 
 
138 aa  67.8  0.00000000009  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.117755  n/a   
 
 
-
 
NC_011884  Cyan7425_2205  multi-sensor hybrid histidine kinase  30.08 
 
 
887 aa  67.8  0.00000000009  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.188088 
 
 
-
 
NC_011145  AnaeK_1155  response regulator receiver protein  31.4 
 
 
132 aa  67.8  0.00000000009  Anaeromyxobacter sp. K  Bacteria  normal  0.194588  n/a   
 
 
-
 
NC_004347  SO_2540  response regulator  27.81 
 
 
192 aa  67.4  0.0000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011989  Avi_3499  transcriptional regulator LuxR family  33.33 
 
 
312 aa  67.4  0.0000000001  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_3248  response regulator receiver protein  31.67 
 
 
121 aa  67.4  0.0000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.500247 
 
 
-
 
NC_009253  Dred_1086  response regulator receiver protein  28 
 
 
256 aa  67.8  0.0000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0812  response regulator receiver protein  28.93 
 
 
269 aa  67.8  0.0000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4164  response regulator/phosphatase  34.48 
 
 
352 aa  67  0.0000000002  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2890  peptidase M52, hydrogen uptake protein  28.96 
 
 
1053 aa  66.2  0.0000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2107  two component transcriptional regulator, AraC family  33.6 
 
 
1349 aa  66.6  0.0000000002  Spirosoma linguale DSM 74  Bacteria  decreased coverage  0.000288147  normal  0.419692 
 
 
-
 
NC_010814  Glov_3523  response regulator receiver modulated metal dependent phosphohydrolase  28.99 
 
 
363 aa  66.6  0.0000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3021  sporulation transcriptional activator Spo0A  28.8 
 
 
264 aa  67  0.0000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000341276  n/a   
 
 
-
 
NC_013216  Dtox_2041  sporulation transcriptional activator Spo0A  28.8 
 
 
258 aa  66.6  0.0000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_1826  response regulator receiver sensor signal transduction histidine kinase  34.19 
 
 
363 aa  66.2  0.0000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0610  response regulator PleD  33.88 
 
 
461 aa  66.2  0.0000000003  Brucella suis 1330  Bacteria  normal  0.961713  n/a   
 
 
-
 
NC_009504  BOV_A0575  response regulator PleD  33.88 
 
 
456 aa  66.2  0.0000000003  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1134  response regulator receiver protein  30.58 
 
 
138 aa  66.2  0.0000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.461969  hitchhiker  0.00297359 
 
 
-
 
NC_011757  Mchl_0931  response regulator receiver modulated diguanylate cyclase  37.14 
 
 
457 aa  65.5  0.0000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.436852  normal  0.104843 
 
 
-
 
NC_013216  Dtox_2000  DNA binding domain protein, excisionase family  34.29 
 
 
212 aa  65.9  0.0000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.27976  normal  0.357405 
 
 
-
 
NC_010172  Mext_0967  diguanylate cyclase  37.14 
 
 
457 aa  65.5  0.0000000004  Methylobacterium extorquens PA1  Bacteria  normal  0.555277  normal  0.0207283 
 
 
-
 
NC_013552  DhcVS_1322  DNA-binding response regulator  33.07 
 
 
226 aa  65.5  0.0000000004  Dehalococcoides sp. VS  Bacteria  normal  0.423029  n/a   
 
 
-
 
NC_011989  Avi_1750  response regulator PleD  34.71 
 
 
457 aa  65.5  0.0000000005  Agrobacterium vitis S4  Bacteria  normal  0.263569  n/a   
 
 
-
 
NC_011662  Tmz1t_2708  response regulator receiver protein  22.16 
 
 
204 aa  65.5  0.0000000005  Thauera sp. MZ1T  Bacteria  normal  0.18523  n/a   
 
 
-
 
NC_011884  Cyan7425_3747  response regulator receiver protein  29.66 
 
 
121 aa  65.5  0.0000000005  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2912  response regulator receiver protein  28 
 
 
141 aa  65.5  0.0000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1390  multi-sensor hybrid histidine kinase  28.33 
 
 
1977 aa  65.5  0.0000000005  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0907  response regulator receiver modulated diguanylate cyclase  37.14 
 
 
457 aa  64.7  0.0000000007  Methylobacterium populi BJ001  Bacteria  normal  0.401363  normal  0.40647 
 
 
-
 
NC_007298  Daro_0562  excisionase/Xis, DNA-binding  26.97 
 
 
195 aa  65.1  0.0000000007  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000579  putative DNA-binding response regulator  33.33 
 
 
237 aa  64.7  0.0000000007  Vibrio sp. Ex25  Bacteria  decreased coverage  0.00151616  n/a   
 
 
-
 
NC_011662  Tmz1t_2259  osmolarity response regulator  29.85 
 
 
257 aa  64.7  0.0000000008  Thauera sp. MZ1T  Bacteria  normal  0.0634187  n/a   
 
 
-
 
NC_011138  MADE_03429  two-component system response regulator (hybrid family) protein  33.33 
 
 
358 aa  64.3  0.0000000009  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0356  response regulator receiver modulated metal dependent phosphohydrolase  30.83 
 
 
360 aa  64.7  0.0000000009  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_08990  DNA-binding protein, excisionase family  44.26 
 
 
72 aa  64.3  0.0000000009  Brachybacterium faecium DSM 4810  Bacteria  normal  0.269526  n/a   
 
 
-
 
NC_002978  WD0221  response regulator PleD  40 
 
 
460 aa  63.9  0.000000001  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  33.07 
 
 
339 aa  64.3  0.000000001  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1392  sporulation transcriptional activator Spo0A  30.51 
 
 
257 aa  63.9  0.000000001  Ammonifex degensii KC4  Bacteria  normal  0.664762  n/a   
 
 
-
 
NC_008390  Bamb_2446  two component transcriptional regulator  31.5 
 
 
251 aa  63.9  0.000000001  Burkholderia ambifaria AMMD  Bacteria  normal  0.490864  n/a   
 
 
-
 
NC_009092  Shew_0981  response regulator receiver protein  33.91 
 
 
155 aa  64.3  0.000000001  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1710  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  28.81 
 
 
720 aa  63.9  0.000000001  Magnetococcus sp. MC-1  Bacteria  normal  0.425295  normal 
 
 
-
 
NC_014148  Plim_2854  DNA binding domain protein, excisionase family  27.32 
 
 
190 aa  64.3  0.000000001  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_2405  two component transcriptional regulator  31.5 
 
 
241 aa  63.5  0.000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.343281  normal  0.0119317 
 
 
-
 
NC_009620  Smed_4179  response regulator receiver protein  30.47 
 
 
309 aa  63.2  0.000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.15819 
 
 
-
 
NC_012918  GM21_0975  response regulator receiver sensor signal transduction histidine kinase  28.46 
 
 
383 aa  63.5  0.000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010084  Bmul_0889  two component transcriptional regulator  31.21 
 
 
305 aa  63.5  0.000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.147318 
 
 
-
 
NC_007510  Bcep18194_A5728  two component transcriptional regulator  31.5 
 
 
280 aa  63.5  0.000000002  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3274  response regulator receiver sensor signal transduction histidine kinase  28.46 
 
 
383 aa  63.2  0.000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3481  sporulation transcriptional activator Spo0A  28.21 
 
 
272 aa  63.2  0.000000002  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0151287  n/a   
 
 
-
 
NC_010172  Mext_3772  response regulator receiver  28.8 
 
 
241 aa  63.2  0.000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.0950932  normal 
 
 
-
 
NC_011831  Cagg_2467  response regulator receiver modulated serine phosphatase  35.25 
 
 
385 aa  63.5  0.000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  31.43 
 
 
309 aa  63.2  0.000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_011757  Mchl_4066  two component transcriptional regulator, winged helix family  28.8 
 
 
241 aa  63.2  0.000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1409  Signal transduction histidine kinase-like  28.12 
 
 
685 aa  63.2  0.000000002  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1090  response regulator receiver protein  33.05 
 
 
846 aa  63.2  0.000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.874134  n/a   
 
 
-
 
NC_008060  Bcen_1789  two component transcriptional regulator  31.5 
 
 
241 aa  63.5  0.000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_1348  response regulator PleD  37.62 
 
 
457 aa  63.5  0.000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2311  two component transcriptional regulator  31.5 
 
 
241 aa  63.5  0.000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1603  response regulator receiver protein  30.66 
 
 
198 aa  63.2  0.000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.209727  normal  0.483504 
 
 
-
 
NC_009784  VIBHAR_05293  hypothetical protein  30.47 
 
 
237 aa  63.9  0.000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008542  Bcen2424_2401  two component transcriptional regulator  31.5 
 
 
241 aa  63.5  0.000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3072  response regulator receiver modulated metal dependent phosphohydrolase  28.1 
 
 
353 aa  63.2  0.000000002  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.000480818 
 
 
-
 
NC_013132  Cpin_2723  histidine kinase  34.43 
 
 
1347 aa  63.5  0.000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0591  two component LuxR family transcriptional regulator  30.95 
 
 
301 aa  63.2  0.000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.477799  hitchhiker  0.00469436 
 
 
-
 
NC_010725  Mpop_4027  two component transcriptional regulator, winged helix family  28.8 
 
 
240 aa  63.5  0.000000002  Methylobacterium populi BJ001  Bacteria  normal  0.886848  normal  0.528233 
 
 
-
 
NC_011662  Tmz1t_2649  response regulator receiver protein  29.41 
 
 
122 aa  62.8  0.000000003  Thauera sp. MZ1T  Bacteria  normal  0.857048  n/a   
 
 
-
 
NC_006348  BMA0750  DNA-binding response regulator OmpR  30.71 
 
 
232 aa  62.8  0.000000003  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1098  PAS:GGDEF  37.69 
 
 
705 aa  62.8  0.000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  30.16 
 
 
338 aa  62.8  0.000000003  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1574  DNA-binding response regulator OmpR  30.71 
 
 
232 aa  62.8  0.000000003  Burkholderia mallei NCTC 10247  Bacteria  normal  0.172544  n/a   
 
 
-
 
NC_007958  RPD_3866  response regulator receiver  30.48 
 
 
309 aa  63.2  0.000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.370865  normal 
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  30.16 
 
 
338 aa  62.8  0.000000003  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  30.16 
 
 
338 aa  62.8  0.000000003  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3408  response regulator receiver modulated metal dependent phosphohydrolase  30.77 
 
 
346 aa  62.8  0.000000003  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  30.16 
 
 
338 aa  62.8  0.000000003  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A0993  DNA-binding response regulator OmpR  30.71 
 
 
232 aa  62.8  0.000000003  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3023  DNA-binding response regulator OmpR  30.71 
 
 
232 aa  62.8  0.000000003  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0975164  n/a   
 
 
-
 
NC_013061  Phep_2824  ATP-binding region ATPase domain protein  26.23 
 
 
1374 aa  62.4  0.000000004  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3776  response regulator receiver domain-containing protein  32.2 
 
 
120 aa  62  0.000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.143561 
 
 
-
 
NC_007492  Pfl01_4373  two component transcriptional regulator  29.92 
 
 
243 aa  62.4  0.000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_0281  multi-sensor signal transduction histidine kinase  33.86 
 
 
526 aa  62.4  0.000000004  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.630164  n/a   
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  33.96 
 
 
303 aa  62.4  0.000000004  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
NC_008312  Tery_3999  adenylate/guanylate cyclase  31.01 
 
 
351 aa  62.4  0.000000004  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.558191 
 
 
-
 
NC_008740  Maqu_2321  two component transcriptional regulator  30.65 
 
 
244 aa  62.4  0.000000004  Marinobacter aquaeolei VT8  Bacteria  normal  0.483652  n/a   
 
 
-
 
NC_013162  Coch_0220  two component transcriptional regulator, AraC family  30.08 
 
 
934 aa  62.4  0.000000004  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.497584  n/a   
 
 
-
 
NC_011769  DvMF_1097  response regulator receiver modulated metal dependent phosphohydrolase  30.16 
 
 
391 aa  62  0.000000005  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.151318 
 
 
-
 
NC_008261  CPF_2067  Spo0A protein  28.69 
 
 
276 aa  62  0.000000005  Clostridium perfringens ATCC 13124  Bacteria  normal  0.935155  n/a   
 
 
-
 
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