| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daro_2890 |
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| Symbol | |
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| ID | 3566295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dechloromonas aromatica RCB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007298 |
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| Strand | + |
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| Start bp | 3111709 |
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| End bp | 3114870 |
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| Gene Length | 3162 bp |
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| Protein Length | 1053 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637681359 |
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| Product | peptidase M52, hydrogen uptake protein |
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| Protein accession | YP_286090 |
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| Protein GI | 71908503 |
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| COG category | [C] Energy production and conversion
[K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0680] Ni,Fe-hydrogenase maturation factor
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00072] hydrogenase maturation protease |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGAAC GAAAGCAGCT GCGCATCCTC TGTTTTGGCA ATCCATTGCA TGGCGACGAC
GGCTTCGGCC CGACCGTCAG CCTGGCATTG CGGCGGAAGG TGCTGCCAGC TGGCGTCGAG
GTCGTCGACT GCGGCACCCG CGGGCTCGAT GTCTTGCATC TGTTCGAAGA CTGCACCAGC
GTCATCGTCA TCGATGCGAT GGCCGGAGAG CGGCCAGGCA CGCTGCATGA ACTCAGCCCG
CACCAGGTGC CGGTTGAAAA TACCGCTAGC GGCGGACATG GCGCCGGGGT GGGCTATCTG
CTGGCAGCCG TGCGCGAGAT GATCGCCAGG CCGCCGGTCA TCAAGATCAT CGCGGTCGAA
ATCGGCGCGG TGAAAAGCTT TTCCCCGGGC CTCTCGCTGG AAGTCGCTGC CGCTGTGAGC
GAGGCCATTG AGCTCATACA AGACTGCTGT GCCGCGATGG CCGGACATGA TCCAGACGAA
CTGGCCAACG AACTGGAAAC GTTGCGCCAG GCCAACCGGG CGCTGGAAGC CGAACTGACC
AAGTGCACCG AGGCACTCGA CCAGCTGATC AGCGAGCAGG AGAACCAGAA CGACGAGTTG
CGCCACCGCT CCCGGCAACT TGCCATGCTG CAAGGTACCG TCGATCGCGC CATCGACACG
ATGGCCGAAA TCATCGTCAT GCTAGGGCCG GACGGACGAG TTACCCGGAC TAACCGGCTG
CTGGAAATCG AACTCGGCTA CACCGCGGAA TCCCTGGTCG GGGGATATTT TGAAGATTGC
CTTCCGCTGG CCGGCCAGAA CGCCCTGCGT GCCTTGCTAC CGGCCGGCGC AAAACCTCCG
CTGCTGCTCA ATGCCATCCG TGCAGCGGGC GGACACTTCG TCGCCGAGCT CAATTTCCGA
CGTGCCGATG CAGCATCGGA GCATGATCTC GAAGGCACCG TACCCTATCT GGTACACGCC
AGCCTGATTC ACAGCCAGGC CGGCAAACTG GAAGGCGCCA TTGTCATTTC GACCAACATT
TCGGTGCTCA AGGCCCGCGA AAAAGCCCTG CGCAACAATG AGCGCCAGTT GCACGAAACC
GCCGAGGAAC TGCGCAACCA CCGCGACAAC CTCGCCGCCA TGGTCGAAGA ACAGACGCGC
GACCTGCGCC AGGCCAAGGA ACAGGCGGAA GAGGCCAGCC GCGCCAAGAG CGAGTTCCTG
TCCAACATGT CGCACGAAGT CCGCACTCCG CTCAATGCGA TTCTCGGGCT TTCCGACCTC
TGCCTGCAGA CCCCGCTCAA CCCCCAACAG AACCAGCATT TGAGCAAAAT TCGACTGGCT
GCCGACCACC TGCTTGGCAT CATCAACGAC ATTCTCGACT TCTCGCGCAT CGAGGCTGGC
AAGCTCAGTA TTGAAAAACT GATCTTTGAA CTGCCATCGC TGCTGGAAGA GATCAGCGAC
CTGCTGATCG GCCGTATCGA AGAAAAAAAC CTGGAACTCT GTGTCGACAT CGCCGCCGAG
GCCAGCCGCA GTTTCGTCGG CGATCCGCTA CGCCTCAAGC AGGTGATCAT CAACCTGCTC
GGCAACGCCA TCAAGTTTTC CGACCAGGGC AGCGTCCGTC TTGGCTGCCG GATCGACAGC
ACCGACCACA ACAGCACCTC GCTGCACTTC TCTGTCAGCG ACGAAGGCAT CGGCATTTCA
GAGGAACAGC AGAATGCCCT GTTCTCCGCC TTCAGCCAGG CCGATACCTC GACCACCCGA
CGCTTCGGCG GATCCGGCCT GGGGCTGGTG ATATCCAAGC GCCTCGTCGA ACTGATGGGC
GGTCGTATCT GGCTGGAAAG CACGCCGGGA AACGGCAGCA CCTTCCACTT CACCATCCGT
CTCGACAATG CCCCCGATGT GCCATTGCTC ATCGATGAAC TGCGCAAGCA TCTGGCCAAA
CATGCCGGGC GTACCGTCCT GATCACCGAC GACAACCCGT TCGCAGCCCA GGCCTTGGCC
GCCCAGTGCC AGCAACTCGG GCTGCTAACC GAAACCTGCC CATCCGGCGA ATCGGCACTG
GCCGCACTGA ACCACCCGGG TGCCAACTAT CTCGCGGCAC TGATCGACTG GCATTTGCCA
GCCGGCCTGG ATGGCGTCGA GACCATGAAA CGAATCAGGA GCAATCTTGG TGTTCAGGCG
CCACCGCTGA TTTTGCTGAG CTCCCAGAAA GCATCCGGGG CAAGCGCTCT CGACGACCTG
CCGGCCGATG CGTTGCTGAT CAAGCCATGC AGTGTGCGCC ACCTATATGC GGCCCTTGCC
CGCCCGCTGC ACCTGCCGGA AATCACCATG CGGGCACCGG CCGTCCCGGC TCTTGATCTC
TCCGGCATCG CCCTGCTCAG CAACACCGAC ATTCTGGTCG TCGATGATAT CGAGCTCAAT
CGTGACCTGA TGCGCGAGCT GTTTGCCACC GCCGGCCTCA ATATCCGCCT CGCCTGCAAC
GGCAGGGAAG CCATCACCGC GATCCACTCA AAGAAACCTG ATCTCGTGCT GATGGACTGC
CAGATGCCGG TCATGGACGG CTTCTCCGCA ACCCGCGAAC TCCGGGCTCG ACCGGAATAC
GCCGAGCTGC CGATCATTGC CCTGACCGCC GGGGCCCTGG ATCACGATCG CGAACAATGT
CTTGCGGCCG GCATGAACGC CTACGTCACC AAGCCGGTCA ATCTCGAAAA ACTGCTCCGC
GTCATCGCCG AGCAGCTTTC ACCAGGCACC GCAGGGTCCA TGCCTGAGCG GCGAACAGCG
CTGCCTCCGC CGCCCCCGAA TTCAGTAACC ACGACGCCGC ACGCCGAAAC CACCAAGCTG
CCAGAGCTAC CTGGCATCGA TGTCACCGCC GGACTGATGC GAGTTCGCAA CAAGGCCGAC
TTTTACTGCC GCATGCTGGT GAAGTTCCGC GATACCCATT GCGCCGCCCT GGCGGCTGAC
CTTCGTGCAG CACTGGACGA GGGGAACCGC CCGGAAGCCA TTCGCCTGGC CCACTCGGTA
AAGGGTATCG CCCTGAGCCT CGGCATTGAC ATGCTGGGTG AGCGAGCCCT GAATCTGGAA
ATGAAACTCA AAGATCCGAC GGCAAGCGAT GTTGCGCCAG AGGTTGAGCT GCTCCTGACC
GAACTGGCGC AGATCCGCCA AGTCTTGCAG GCCCTCGGCT AG
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| Protein sequence | MSERKQLRIL CFGNPLHGDD GFGPTVSLAL RRKVLPAGVE VVDCGTRGLD VLHLFEDCTS
VIVIDAMAGE RPGTLHELSP HQVPVENTAS GGHGAGVGYL LAAVREMIAR PPVIKIIAVE
IGAVKSFSPG LSLEVAAAVS EAIELIQDCC AAMAGHDPDE LANELETLRQ ANRALEAELT
KCTEALDQLI SEQENQNDEL RHRSRQLAML QGTVDRAIDT MAEIIVMLGP DGRVTRTNRL
LEIELGYTAE SLVGGYFEDC LPLAGQNALR ALLPAGAKPP LLLNAIRAAG GHFVAELNFR
RADAASEHDL EGTVPYLVHA SLIHSQAGKL EGAIVISTNI SVLKAREKAL RNNERQLHET
AEELRNHRDN LAAMVEEQTR DLRQAKEQAE EASRAKSEFL SNMSHEVRTP LNAILGLSDL
CLQTPLNPQQ NQHLSKIRLA ADHLLGIIND ILDFSRIEAG KLSIEKLIFE LPSLLEEISD
LLIGRIEEKN LELCVDIAAE ASRSFVGDPL RLKQVIINLL GNAIKFSDQG SVRLGCRIDS
TDHNSTSLHF SVSDEGIGIS EEQQNALFSA FSQADTSTTR RFGGSGLGLV ISKRLVELMG
GRIWLESTPG NGSTFHFTIR LDNAPDVPLL IDELRKHLAK HAGRTVLITD DNPFAAQALA
AQCQQLGLLT ETCPSGESAL AALNHPGANY LAALIDWHLP AGLDGVETMK RIRSNLGVQA
PPLILLSSQK ASGASALDDL PADALLIKPC SVRHLYAALA RPLHLPEITM RAPAVPALDL
SGIALLSNTD ILVVDDIELN RDLMRELFAT AGLNIRLACN GREAITAIHS KKPDLVLMDC
QMPVMDGFSA TRELRARPEY AELPIIALTA GALDHDREQC LAAGMNAYVT KPVNLEKLLR
VIAEQLSPGT AGSMPERRTA LPPPPPNSVT TTPHAETTKL PELPGIDVTA GLMRVRNKAD
FYCRMLVKFR DTHCAALAAD LRAALDEGNR PEAIRLAHSV KGIALSLGID MLGERALNLE
MKLKDPTASD VAPEVELLLT ELAQIRQVLQ ALG
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