Gene SO_2540 details

Gene Information

• Locus tag: SO_2540
• ID: 1170247
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 2671411
• End bp: 2671989
• Gene Length: 579 bp
• Protein Length: 192 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 637344371
• Product: response regulator
• Protein accession: NP_718126
• Protein GI: 24374083
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
• TIGRFAM ID: [TIGR01764] DNA binding domain, excisionase family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAACGC TCAAGCCAAG CGATATCGCC CAATATTGCG ATGTTCATCA ACGCACTGTT 
AGCCGCTGGA TTGCTAAAGG TCAATTAAAG GGGCACAAGT TACCGGGGCG GGGTAATTAT 
CGAGTCTTGG TAGAAGACTT TATTAGTTTC TTACATCAAC AAAACATGCC CATGCCAGAG 
GCATTTTTAG CCTCAAATAA TAATGAGTTA ACGGTTGATA AAAAGTCTAT CCTTATTATT 
GATGATGAGT TATCAATGAG AAATGCACTT AGGCGGGCAT TGCAATCGAC GCCTTTTACG 
ATTTTAACGG CACAGGATGG CTTTCAAGCT GGGGTTAAAG TTATTGCTGA AAAACCAGAT 
TTAATCCTTC TTGACTTGTC TTTGCCTGGA TTGGATGGTT TTGAGGTAAT CCAGTTTATT 
CGGCAACGAC CGGATTTAGC AAAGCTTAAA ATTTTAGTGT TATCAGGGCT TTCATCAATT 
GAGCTAGCGG AGTCAATCAG ATTAGGAGCC GATGACGCAA TAGCAAAGCC TTTTGATAAT 
CATGATCTAT TGGACAGAGT AAATATGCTA TTAAGCTAG 

 

Protein sequence

MKTLKPSDIA QYCDVHQRTV SRWIAKGQLK GHKLPGRGNY RVLVEDFISF LHQQNMPMPE 
AFLASNNNEL TVDKKSILII DDELSMRNAL RRALQSTPFT ILTAQDGFQA GVKVIAEKPD 
LILLDLSLPG LDGFEVIQFI RQRPDLAKLK ILVLSGLSSI ELAESIRLGA DDAIAKPFDN 
HDLLDRVNML LS