More than 300 homologs were found in PanDaTox collection
for query gene CPS_1938 on replicon NC_003910
Organism: Colwellia psychrerythraea 34H



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003910  CPS_1938  excisionase family DNA-binding response regulator  100 
 
 
190 aa  384  1e-106  Colwellia psychrerythraea 34H  Bacteria  normal  0.440271  n/a   
 
 
-
 
NC_003910  CPS_4926  merR family DNA-binding response regulator  37.84 
 
 
192 aa  130  1.0000000000000001e-29  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1619  DNA-binding response regulator  34.68 
 
 
185 aa  119  3.9999999999999996e-26  Colwellia psychrerythraea 34H  Bacteria  normal  0.208637  n/a   
 
 
-
 
NC_002967  TDE0855  DNA-binding response regulator  29.05 
 
 
189 aa  99.4  3e-20  Treponema denticola ATCC 35405  Bacteria  normal  0.0365807  n/a   
 
 
-
 
NC_014148  Plim_2544  DNA binding domain protein, excisionase family  29.51 
 
 
264 aa  93.6  2e-18  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0361834  n/a   
 
 
-
 
NC_007348  Reut_B5042  excisionase/Xis, DNA-binding  27.98 
 
 
198 aa  91.3  7e-18  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2540  response regulator  29.05 
 
 
192 aa  76.3  0.0000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007948  Bpro_4196  response regulator receiver domain-containing protein  30.54 
 
 
215 aa  76.3  0.0000000000003  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_1134  response regulator receiver protein  35.59 
 
 
138 aa  74.7  0.0000000000008  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.461969  hitchhiker  0.00297359 
 
 
-
 
NC_011891  A2cp1_1223  response regulator receiver protein  36.21 
 
 
132 aa  73.6  0.000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1155  response regulator receiver protein  36.21 
 
 
132 aa  73.6  0.000000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.194588  n/a   
 
 
-
 
NC_008752  Aave_2239  response regulator receiver protein  23.84 
 
 
209 aa  73.6  0.000000000002  Acidovorax citrulli AAC00-1  Bacteria  hitchhiker  0.00314839  hitchhiker  0.0000034786 
 
 
-
 
NC_007760  Adeh_1095  response regulator receiver domain-containing protein  36.21 
 
 
138 aa  73.6  0.000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.117755  n/a   
 
 
-
 
NC_009921  Franean1_1003  response regulator receiver protein  29.63 
 
 
128 aa  72.8  0.000000000003  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_0825  response regulator receiver  35.09 
 
 
204 aa  72.8  0.000000000003  Methanococcoides burtonii DSM 6242  Archaea  normal  0.751719  n/a   
 
 
-
 
NC_014165  Tbis_0845  response regulator receiver protein  32.48 
 
 
125 aa  72.8  0.000000000003  Thermobispora bispora DSM 43833  Bacteria  normal  0.455865  normal  0.167506 
 
 
-
 
NC_013501  Rmar_1501  response regulator receiver protein  32.14 
 
 
132 aa  72  0.000000000004  Rhodothermus marinus DSM 4252  Bacteria  normal  0.153095  n/a   
 
 
-
 
NC_013510  Tcur_3942  response regulator receiver protein  32.11 
 
 
163 aa  72  0.000000000005  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2708  response regulator receiver protein  28.79 
 
 
204 aa  71.6  0.000000000007  Thauera sp. MZ1T  Bacteria  normal  0.18523  n/a   
 
 
-
 
NC_013501  Rmar_2671  two component transcriptional regulator, winged helix family  31.54 
 
 
243 aa  71.6  0.000000000007  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0328  response regulator receiver domain-containing protein  36.75 
 
 
406 aa  71.2  0.000000000009  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.918345  n/a   
 
 
-
 
NC_011138  MADE_03493  response regulator  26.32 
 
 
186 aa  70.5  0.00000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_1978  serine/threonine protein kinase  31.78 
 
 
473 aa  69.7  0.00000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0767108 
 
 
-
 
NC_010338  Caul_1497  response regulator PleD  35.51 
 
 
454 aa  69.3  0.00000000003  Caulobacter sp. K31  Bacteria  normal  normal  0.122959 
 
 
-
 
NC_013730  Slin_2044  response regulator receiver protein  37.74 
 
 
123 aa  69.7  0.00000000003  Spirosoma linguale DSM 74  Bacteria  normal  0.0300859  normal  0.405857 
 
 
-
 
NC_007298  Daro_0562  excisionase/Xis, DNA-binding  28.81 
 
 
195 aa  68.6  0.00000000005  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_3728  response regulator receiver protein  28.44 
 
 
128 aa  68.6  0.00000000005  Frankia sp. CcI3  Bacteria  normal  normal  0.445342 
 
 
-
 
NC_009943  Dole_2335  response regulator receiver protein  36.75 
 
 
411 aa  68.6  0.00000000005  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.0000388714  n/a   
 
 
-
 
NC_010725  Mpop_0907  response regulator receiver modulated diguanylate cyclase  32.17 
 
 
457 aa  68.6  0.00000000006  Methylobacterium populi BJ001  Bacteria  normal  0.401363  normal  0.40647 
 
 
-
 
NC_008781  Pnap_0451  response regulator receiver protein  26.88 
 
 
213 aa  68.6  0.00000000006  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_1632  response regulator receiver  32.38 
 
 
123 aa  68.6  0.00000000006  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_1537  response regulator receiver protein  27.78 
 
 
272 aa  68.2  0.00000000006  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0871  response regulator receiver modulated metal dependent phosphohydrolase  30.7 
 
 
338 aa  67.8  0.00000000008  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1228  response regulator receiver modulated diguanylate cyclase  34.78 
 
 
349 aa  68.2  0.00000000008  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0859  response regulator receiver modulated metal dependent phosphohydrolase  30.7 
 
 
338 aa  67.8  0.00000000008  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_0836  response regulator receiver modulated metal dependent phosphohydrolase  30.7 
 
 
338 aa  68.2  0.00000000008  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3504  response regulator receiver modulated metal dependent phosphohydrolase  30.7 
 
 
338 aa  67.8  0.00000000008  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2304  multi-sensor hybrid histidine kinase  26.14 
 
 
870 aa  67.8  0.00000000009  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0629  response regulator receiver modulated metal dependent phosphohydrolase  33.64 
 
 
339 aa  67.8  0.00000000009  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1236  response regulator receiver sensor signal transduction histidine kinase  34.86 
 
 
386 aa  67.8  0.0000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  0.493129  normal 
 
 
-
 
NC_007969  Pcryo_2096  CheA signal transduction histidine kinases  32.73 
 
 
2301 aa  67  0.0000000001  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0355  response regulator receiver protein  35.85 
 
 
161 aa  67.4  0.0000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.384709  normal  0.97064 
 
 
-
 
NC_010623  Bphy_4530  response regulator receiver sensor signal transduction histidine kinase  34.86 
 
 
386 aa  67  0.0000000002  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4164  response regulator/phosphatase  36.59 
 
 
352 aa  66.6  0.0000000002  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2002  two component transcriptional regulator, LuxR family  35.34 
 
 
306 aa  67  0.0000000002  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010002  Daci_1874  response regulator receiver protein  20.53 
 
 
212 aa  67  0.0000000002  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4068  response regulator receiver  30.65 
 
 
377 aa  66.6  0.0000000002  Ralstonia eutropha JMP134  Bacteria  normal  0.706307  n/a   
 
 
-
 
NC_009092  Shew_3199  response regulator receiver modulated metal dependent phosphohydrolase  33.33 
 
 
339 aa  67  0.0000000002  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  32.71 
 
 
231 aa  67  0.0000000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  32.73 
 
 
376 aa  67  0.0000000002  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_010524  Lcho_0733  response regulator receiver protein  27.16 
 
 
215 aa  66.6  0.0000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011757  Mchl_0931  response regulator receiver modulated diguanylate cyclase  32.17 
 
 
457 aa  65.9  0.0000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.436852  normal  0.104843 
 
 
-
 
NC_010172  Mext_0967  diguanylate cyclase  32.17 
 
 
457 aa  65.9  0.0000000003  Methylobacterium extorquens PA1  Bacteria  normal  0.555277  normal  0.0207283 
 
 
-
 
NC_011884  Cyan7425_3747  response regulator receiver protein  31.43 
 
 
121 aa  65.9  0.0000000003  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2404  response regulator receiver protein  31.19 
 
 
119 aa  65.9  0.0000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.190427 
 
 
-
 
NC_004347  SO_0860  response regulator  31.03 
 
 
339 aa  65.9  0.0000000004  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007484  Noc_0126  CheA signal transduction histidine kinase  29.85 
 
 
1758 aa  65.5  0.0000000004  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_5113  response regulator receiver protein  32.38 
 
 
121 aa  65.5  0.0000000004  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_002978  WD0221  response regulator PleD  36.45 
 
 
460 aa  65.5  0.0000000005  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2563  periplasmic sensor hybrid histidine kinase  35.34 
 
 
935 aa  65.5  0.0000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.851477 
 
 
-
 
NC_010581  Bind_1213  response regulator receiver modulated diguanylate cyclase  34.86 
 
 
457 aa  65.1  0.0000000006  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_3141  response regulator receiver modulated metal dependent phosphohydrolase  31.82 
 
 
338 aa  65.1  0.0000000006  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3418  response regulator receiver modulated metal dependent phosphohydrolase  31.82 
 
 
338 aa  65.1  0.0000000006  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0323  two component transcriptional regulator  30.43 
 
 
227 aa  65.1  0.0000000006  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_0716  response regulator receiver modulated metal dependent phosphohydrolase  31.82 
 
 
338 aa  65.1  0.0000000006  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3306  response regulator receiver modulated metal dependent phosphohydrolase  31.82 
 
 
338 aa  65.1  0.0000000006  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7417  response regulator receiver modulated diguanylate cyclase  33.33 
 
 
457 aa  64.7  0.0000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.196799  n/a   
 
 
-
 
NC_009505  BOV_2058  phosphate regulon transcriptional regulatory protein PhoB  27.87 
 
 
228 aa  64.7  0.0000000007  Brucella ovis ATCC 25840  Bacteria  normal  0.275433  n/a   
 
 
-
 
NC_004310  BR2143  phosphate regulon transcriptional regulatory protein Phob  27.87 
 
 
228 aa  64.7  0.0000000008  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1934  two component, sigma54 specific, Fis family transcriptional regulator  32.74 
 
 
476 aa  64.7  0.0000000008  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.808753  normal  0.132653 
 
 
-
 
NC_013162  Coch_0220  two component transcriptional regulator, AraC family  32.17 
 
 
934 aa  64.7  0.0000000008  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.497584  n/a   
 
 
-
 
NC_007947  Mfla_1243  response regulator receiver domain-containing protein  33.62 
 
 
121 aa  64.7  0.0000000008  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.253807 
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  32.48 
 
 
231 aa  64.7  0.0000000008  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_009253  Dred_1555  response regulator receiver protein  33.64 
 
 
121 aa  64.3  0.0000000009  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2904  response regulator receiver protein  33.96 
 
 
137 aa  63.9  0.000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4718  phosphate regulon transcriptional regulatory protein PhoB  30.17 
 
 
239 aa  63.9  0.000000001  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.220817 
 
 
-
 
NC_010622  Bphy_0134  histidine kinase  31.43 
 
 
547 aa  64.3  0.000000001  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1718  response regulator receiver protein  36.61 
 
 
224 aa  63.9  0.000000001  Shewanella amazonensis SB2B  Bacteria  normal  0.0955826  normal  0.0525727 
 
 
-
 
NC_007760  Adeh_1989  response regulator receiver domain-containing protein  34.71 
 
 
126 aa  63.9  0.000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0766  two component transcriptional regulator  28.69 
 
 
228 aa  64.3  0.000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0291358  n/a   
 
 
-
 
NC_011757  Mchl_5185  two component transcriptional regulator PhoB, winged helix family  30.17 
 
 
234 aa  63.9  0.000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.809056 
 
 
-
 
NC_010511  M446_6679  response regulator receiver modulated diguanylate cyclase  33.33 
 
 
457 aa  63.9  0.000000001  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1864  response regulator receiver modulated diguanylate cyclase  31.62 
 
 
457 aa  63.9  0.000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.831894  normal  0.121309 
 
 
-
 
NC_011662  Tmz1t_2649  response regulator receiver protein  30.84 
 
 
122 aa  64.3  0.000000001  Thauera sp. MZ1T  Bacteria  normal  0.857048  n/a   
 
 
-
 
NC_009439  Pmen_0408  CheA signal transduction histidine kinase  28.47 
 
 
2423 aa  63.9  0.000000001  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_13280  two component transcriptional regulator, winged helix family  33.33 
 
 
227 aa  63.9  0.000000001  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000536961  n/a   
 
 
-
 
NC_014148  Plim_2180  response regulator receiver  30.84 
 
 
151 aa  64.3  0.000000001  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.269305  n/a   
 
 
-
 
NC_008340  Mlg_2054  response regulator receiver protein  31.09 
 
 
140 aa  64.3  0.000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0880044 
 
 
-
 
NC_010001  Cphy_0154  two component transcriptional regulator  33.04 
 
 
238 aa  63.9  0.000000001  Clostridium phytofermentans ISDg  Bacteria  normal  0.644268  n/a   
 
 
-
 
NC_013037  Dfer_0393  histidine kinase  29.52 
 
 
1200 aa  63.5  0.000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.564913 
 
 
-
 
NC_007204  Psyc_1813  putative hybrid two-component sensor and regulatory protein  32.52 
 
 
2284 aa  63.2  0.000000002  Psychrobacter arcticus 273-4  Bacteria  normal  0.409027  normal 
 
 
-
 
NC_011145  AnaeK_1889  response regulator receiver protein  34.71 
 
 
126 aa  63.9  0.000000002  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1475  response regulator receiver modulated GAF sensor protein  31.58 
 
 
311 aa  63.2  0.000000002  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_012880  Dd703_3123  response regulator receiver modulated diguanylate cyclase  34.96 
 
 
312 aa  63.5  0.000000002  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3354  response regulator receiver protein  28.68 
 
 
147 aa  63.2  0.000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.878811  normal 
 
 
-
 
NC_013161  Cyan8802_1502  response regulator receiver modulated GAF sensor protein  31.58 
 
 
311 aa  63.2  0.000000002  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1220  response regulator receiver protein  27.12 
 
 
130 aa  63.2  0.000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4352  multi-sensor hybrid histidine kinase  31.03 
 
 
1287 aa  63.2  0.000000002  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.06083 
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  30.28 
 
 
239 aa  63.5  0.000000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_012560  Avin_03180  type IV pili response regulator, PilG  34.55 
 
 
135 aa  63.2  0.000000002  Azotobacter vinelandii DJ  Bacteria  normal  0.392248  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>