More than 300 homologs were found in PanDaTox collection
for query gene Sfri_3082 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009092  Shew_0876  methyl-accepting chemotaxis sensory transducer  63.06 
 
 
674 aa  838    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1011  methyl-accepting chemotaxis sensory transducer  61.04 
 
 
675 aa  781    Shewanella woodyi ATCC 51908  Bacteria  normal  0.547128  hitchhiker  0.00024543 
 
 
-
 
NC_004347  SO_3642  methyl-accepting chemotaxis protein  64.78 
 
 
673 aa  780    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1076  methyl-accepting chemotaxis sensory transducer  65.38 
 
 
673 aa  833    Shewanella baltica OS195  Bacteria  normal  0.450868  normal 
 
 
-
 
NC_009665  Shew185_1043  methyl-accepting chemotaxis sensory transducer  65.53 
 
 
673 aa  833    Shewanella baltica OS185  Bacteria  normal  0.530938  n/a   
 
 
-
 
NC_009831  Ssed_0961  methyl-accepting chemotaxis sensory transducer  61.33 
 
 
675 aa  749    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0859  methyl-accepting chemotaxis sensory transducer  62.26 
 
 
673 aa  800    Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0974  methyl-accepting chemotaxis sensory transducer  65.08 
 
 
673 aa  832    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3212  methyl-accepting chemotaxis sensory transducer  64.49 
 
 
673 aa  802    Shewanella sp. ANA-3  Bacteria  normal  0.990285  normal  0.659639 
 
 
-
 
NC_007954  Sden_2891  chemotaxis sensory transducer  69.69 
 
 
673 aa  932    Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0986  methyl-accepting chemotaxis sensory transducer  63.15 
 
 
673 aa  781    Shewanella putrefaciens CN-32  Bacteria  normal  0.603679  n/a   
 
 
-
 
NC_008321  Shewmr4_0902  methyl-accepting chemotaxis sensory transducer  64.78 
 
 
673 aa  800    Shewanella sp. MR-4  Bacteria  normal  normal  0.73728 
 
 
-
 
NC_008700  Sama_2822  putative methyl-accepting chemotaxis sensory transducer  64.34 
 
 
673 aa  843    Shewanella amazonensis SB2B  Bacteria  normal  normal  0.428629 
 
 
-
 
NC_008322  Shewmr7_3118  methyl-accepting chemotaxis sensory transducer  64.93 
 
 
673 aa  802    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3316  methyl-accepting chemotaxis sensory transducer  65.08 
 
 
673 aa  830    Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3082  methyl-accepting chemotaxis sensory transducer  100 
 
 
673 aa  1330    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3424  methyl-accepting chemotaxis sensory transducer  42.43 
 
 
674 aa  496  1e-139  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.560716  n/a   
 
 
-
 
NC_003910  CPS_4528  methyl-accepting chemotaxis protein  40.47 
 
 
672 aa  449  1e-125  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03417  methyl-accepting chemotaxis protein  41.76 
 
 
674 aa  448  1.0000000000000001e-124  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.617562  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  43.26 
 
 
543 aa  250  6e-65  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01085  methyl-accepting chemotaxis protein  30.16 
 
 
672 aa  249  2e-64  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0241745  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  39.9 
 
 
637 aa  248  3e-64  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_009456  VC0395_0207  methyl-accepting chemotaxis protein  32.07 
 
 
666 aa  246  9.999999999999999e-64  Vibrio cholerae O395  Bacteria  normal  0.152775  n/a   
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  43.45 
 
 
636 aa  242  2e-62  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  43.66 
 
 
637 aa  240  5e-62  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  42 
 
 
640 aa  238  3e-61  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  39.04 
 
 
642 aa  237  5.0000000000000005e-61  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  40.57 
 
 
629 aa  236  7e-61  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  40.86 
 
 
640 aa  236  1.0000000000000001e-60  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  39.79 
 
 
674 aa  234  4.0000000000000004e-60  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  38.44 
 
 
638 aa  234  6e-60  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  41.42 
 
 
638 aa  232  2e-59  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  40.75 
 
 
638 aa  232  2e-59  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  40.75 
 
 
638 aa  232  2e-59  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_5092  histidine kinase, HAMP region: chemotaxis sensory transducer  41.83 
 
 
640 aa  231  4e-59  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  41.14 
 
 
541 aa  231  4e-59  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  41.87 
 
 
638 aa  230  6e-59  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  41.24 
 
 
634 aa  229  9e-59  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  42.46 
 
 
679 aa  229  1e-58  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5553  methyl-accepting chemotaxis protein  41.26 
 
 
640 aa  229  2e-58  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  39.09 
 
 
713 aa  228  2e-58  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  39.1 
 
 
634 aa  228  3e-58  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  38.73 
 
 
564 aa  227  5.0000000000000005e-58  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  38.76 
 
 
642 aa  227  5.0000000000000005e-58  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_007954  Sden_2638  chemotaxis sensory transducer  29.51 
 
 
675 aa  226  1e-57  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  40.3 
 
 
572 aa  225  2e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0778  methyl-accepting chemotaxis sensory transducer  43.07 
 
 
639 aa  226  2e-57  Pseudomonas putida W619  Bacteria  normal  normal  0.66043 
 
 
-
 
NC_007492  Pfl01_0728  chemotaxis sensory transducer  41.76 
 
 
639 aa  224  3e-57  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  38.79 
 
 
552 aa  224  3e-57  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  36.99 
 
 
633 aa  224  4e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  39.83 
 
 
634 aa  223  9.999999999999999e-57  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  37.06 
 
 
712 aa  223  9.999999999999999e-57  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  37.16 
 
 
712 aa  222  1.9999999999999999e-56  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  39.12 
 
 
716 aa  221  3e-56  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  38.78 
 
 
681 aa  221  3.9999999999999997e-56  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_003910  CPS_3864  methyl-accepting chemotaxis protein  34.05 
 
 
568 aa  220  5e-56  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  43.2 
 
 
646 aa  220  5e-56  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_009512  Pput_4520  methyl-accepting chemotaxis sensory transducer  42.47 
 
 
639 aa  220  7e-56  Pseudomonas putida F1  Bacteria  normal  normal  0.886367 
 
 
-
 
NC_013422  Hneap_1124  methyl-accepting chemotaxis sensory transducer  38.76 
 
 
547 aa  219  8.999999999999998e-56  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00163985  n/a   
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  39.55 
 
 
634 aa  219  1e-55  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0317  methyl-accepting chemotaxis sensory transducer  40.86 
 
 
541 aa  218  2e-55  Pseudomonas putida KT2440  Bacteria  normal  0.365849  decreased coverage  0.0000342214 
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  39.77 
 
 
653 aa  218  2e-55  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_009512  Pput_0339  methyl-accepting chemotaxis sensory transducer  40.86 
 
 
541 aa  219  2e-55  Pseudomonas putida F1  Bacteria  normal  0.722367  normal 
 
 
-
 
NC_010322  PputGB1_0340  methyl-accepting chemotaxis sensory transducer  40.57 
 
 
541 aa  218  2.9999999999999998e-55  Pseudomonas putida GB-1  Bacteria  normal  0.582352  normal 
 
 
-
 
NC_002947  PP_4658  methyl-accepting chemotaxis sensory transducer  42.17 
 
 
639 aa  218  4e-55  Pseudomonas putida KT2440  Bacteria  normal  0.415489  normal 
 
 
-
 
NC_013457  VEA_000971  methyl-accepting chemotaxis protein  38.04 
 
 
553 aa  217  5e-55  Vibrio sp. Ex25  Bacteria  normal  0.370017  n/a   
 
 
-
 
NC_004578  PSPTO_3680  methyl-accepting chemotaxis protein  38.82 
 
 
676 aa  216  9.999999999999999e-55  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_4653  methyl-accepting chemotaxis sensory transducer  41.57 
 
 
639 aa  216  9.999999999999999e-55  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0712  putative methyl-accepting chemotaxis sensory transducer  43.03 
 
 
624 aa  216  9.999999999999999e-55  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_07022  histidine kinase  39.56 
 
 
553 aa  216  9.999999999999999e-55  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_5159  methyl-accepting chemotaxis protein  38.23 
 
 
638 aa  215  1.9999999999999998e-54  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  34.02 
 
 
552 aa  215  1.9999999999999998e-54  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_007492  Pfl01_4833  chemotaxis sensory transducer  39.94 
 
 
541 aa  215  1.9999999999999998e-54  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.000956827  normal  0.082646 
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  40 
 
 
540 aa  214  2.9999999999999995e-54  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3557  methyl-accepting chemotaxis transducer  43.1 
 
 
714 aa  214  3.9999999999999995e-54  Pseudomonas putida KT2440  Bacteria  normal  0.386044  normal 
 
 
-
 
NC_009656  PSPA7_3666  chemotaxis transducer  39.29 
 
 
541 aa  214  3.9999999999999995e-54  Pseudomonas aeruginosa PA7  Bacteria  normal  0.260935  n/a   
 
 
-
 
NC_009512  Pput_2217  methyl-accepting chemotaxis sensory transducer  43.1 
 
 
714 aa  214  4.9999999999999996e-54  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4890  methyl-accepting chemotaxis sensory transducer  40.29 
 
 
541 aa  214  4.9999999999999996e-54  Pseudomonas putida W619  Bacteria  normal  0.452969  normal  0.355365 
 
 
-
 
NC_009439  Pmen_1998  methyl-accepting chemotaxis sensory transducer  42.77 
 
 
714 aa  214  4.9999999999999996e-54  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0164438 
 
 
-
 
NC_010501  PputW619_3984  methyl-accepting chemotaxis sensory transducer  40.9 
 
 
688 aa  213  5.999999999999999e-54  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  40 
 
 
650 aa  214  5.999999999999999e-54  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_009831  Ssed_1007  methyl-accepting chemotaxis sensory transducer  37.22 
 
 
573 aa  213  1e-53  Shewanella sediminis HAW-EB3  Bacteria  normal  0.02936  normal 
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  38.37 
 
 
647 aa  212  1e-53  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1425  methyl-accepting chemotaxis sensory transducer  42.26 
 
 
438 aa  213  1e-53  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  36.84 
 
 
653 aa  212  2e-53  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_011901  Tgr7_1672  methyl-accepting chemotaxis sensory transducer  38.64 
 
 
544 aa  212  2e-53  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2268  methyl-accepting chemotaxis sensory transducer  38.76 
 
 
541 aa  212  2e-53  Pseudomonas putida GB-1  Bacteria  normal  0.255239  normal 
 
 
-
 
NC_010506  Swoo_0732  methyl-accepting chemotaxis sensory transducer  39.94 
 
 
555 aa  212  2e-53  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.177926 
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  40.28 
 
 
560 aa  212  2e-53  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_008463  PA14_43710  putative methyl-accepting chemotaxis transducer  38.86 
 
 
541 aa  211  2e-53  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2472  methyl-accepting chemotaxis protein  29.14 
 
 
661 aa  211  3e-53  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.256702  n/a   
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  32.5 
 
 
541 aa  211  3e-53  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_009656  PSPA7_2546  putative chemotaxis transducer  41.33 
 
 
714 aa  211  3e-53  Pseudomonas aeruginosa PA7  Bacteria  normal  0.410637  n/a   
 
 
-
 
NC_009512  Pput_2091  methyl-accepting chemotaxis sensory transducer  38.76 
 
 
541 aa  211  4e-53  Pseudomonas putida F1  Bacteria  normal  0.596764  normal 
 
 
-
 
NC_009457  VC0395_A1249  methyl-accepting chemotaxis protein  39 
 
 
596 aa  210  7e-53  Vibrio cholerae O395  Bacteria  hitchhiker  0.000483868  n/a   
 
 
-
 
NC_008463  PA14_29760  putative chemotaxis transducer  41.04 
 
 
714 aa  210  7e-53  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  34.93 
 
 
619 aa  210  8e-53  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  37.43 
 
 
541 aa  210  8e-53  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3948  methyl-accepting chemotaxis sensory transducer  36 
 
 
658 aa  209  1e-52  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  38.57 
 
 
559 aa  209  2e-52  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
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