| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0961 |
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| Symbol | |
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| ID | 5610591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1142417 |
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| End bp | 1144444 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931809 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001472700 |
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| Protein GI | 157374100 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATGA ATGTCGCCAC TAGAGTCATT GGTGGGTTTA GTGTTGTCAC CCTGTTACTC
ATCGCTTTGG GGGGAGCTTC ATTATTTACC AATAGTAAAC TCAAGACGAG TACTCAGGTA
CTGCAAGAGT TCAGCCTGCC GGCACTCGAA TCCAGTGGTC ATCTTGTGGA GAGCCTTTCC
CTTCAAGAAA CACAACTCCT AACCGCTTAC CACAGTGACA ATTCGAATAA AATTCCGGTA
ATCGAGAGCA AGTATTCAAA AAATAATCAA ACATTTTTCA ACGAATTAGA TACGCTATCT
AATATCGTCA GCACGCAGAA ACAGACTGAT TTAAATAGGA TTATTTCAGA TTTGCGTCAA
AGCTACTCAA GTTTTGAAGC TGATGGTAAG AAGATGATCC AAACCAAGAA AAGTGCGCTT
GCGACTCAAG AAAATTTAAC CTCTAATTTA GAAGCTCTTG AGGAAGCGGC TGACGATACG
GCCTCTCTTT TATTAGATCT TATCGATCTT GAAATAAGTA AAGATCCTGT CGAGCAGCAA
ATTGCGGCGA CAGCCGGTGA TATTGATAAC AGCTTAAGTG GTATTGTCAG TACCAGTTTA
GACTTAGTGA ATAGCGGTGA TAAGCAGCAA CACGAAACCA TCACACAGGA GCTAAACTAC
TTCATCAGGA ATATCGACTA TAAACTTGAA TATTTAAAGA GTAATTGGGG AGAGTTTATT
GACGAAGACC TACTTTCCGA GGTCAATGTC GAAGCAAAAA AAGTGCTTTC GATGCTTGAA
GGCAATGGCT CTATTCAAGC CTTAAAAGGA CGCCAATTGA ACTTTGTATC TTCAACAGAC
CAGATGCTCA GTCAAGTCGA AAAAGATACT CAAAATCTCA ATCAGAATAT GAGAGCCTTA
ACCGATGCAG TAGAGTCTGT CTCGAAAGAG GTAAGTAACA AGGCAATCAG TGATATCGAC
GCTGCCAGTA TCAATACTCT AATCTTGGTA ATCGTTGCAA TTGTGGTCTC TATTATTGTC
AGTATTGCAG TGATCCGCCC CCTCACCCAA TCTCTTGCCA AGGTCAATAA TGCCCTTAAT
ATCCTTGCAT CGGGTAACTT GACACATAAA TTAGATGATA CCGGTCATGA TGAATTTGCC
GAACTATCCA AAAACTGTAA TCGATTGGTC GACAGCTTAC GAAATTTGAT CCAGGGGATC
TTAGATCGCT CTAATCAGCT TGCCGCAGCG GCAGAAGAAA CGTCGGCCAT CACAATGCAA
ACGACTGCCA GCATTCAGGA GCAGAAGAGT CAGGTCGATC AAGTCGCCAC AGCCACGACG
GAATTGAGCT CCAGCGCTCA GCAAGTGACG ACAAGTGCCG ATGATGCACT GCAGCAGATT
AAGCAGGCTG ATGATGAAGC GCTGCATATG CGAACCATTG CCGATGAGAA TAAACAGACG
ATTCTTGCGC TGGCCGACGA AGTCGCTAAG GCTGGGGTTG TGATCAATAA AGTCCACTCC
GATAGTGCCT CTATCGGCTC CATCCTCGAT GTTATTCGAG GCATTGCCGA ACAGACTAAC
CTATTGGCAC TCAACGCGGC AATCGAAGCT GCCAGAGCCG GAGAACAGGG TCGTGGGTTT
GCGGTCGTTG CAGATGAGGT GAGAAGCTTG GCCTCAAGGA CTCAAGATTC TACACAAGAG
ATACAGCAGA TGATCGAGGT ACTGCAGCAA GGTGCTCAGG AAGCGGTCTC AGTGATGGAG
ATGGGGCGTG CTCAGGCAAG TTCTTGTGTC GATAAGACCG AACAGGCCAA CATTGCACTC
GAGAGCATCA GCGAATCCGT CCATCAAGCA CATGACTCAG GCACTCATAT CGCCCACGCT
GCACAAGAGC AAAACATTGT CAGTCAGCAA GTTTCTGAGA AGCTTGAGCA TATCGCAGCC
ATCTCGGAAG AGACCTCAAC AGGCGCCGAA CAAACGGCTC AATCGAGTCA TCAAGTGGCC
CAACTGGCCG AGGAGCTACA AGCTTCGGTG AGAGAATTTA CTGTTTAA
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| Protein sequence | MKMNVATRVI GGFSVVTLLL IALGGASLFT NSKLKTSTQV LQEFSLPALE SSGHLVESLS
LQETQLLTAY HSDNSNKIPV IESKYSKNNQ TFFNELDTLS NIVSTQKQTD LNRIISDLRQ
SYSSFEADGK KMIQTKKSAL ATQENLTSNL EALEEAADDT ASLLLDLIDL EISKDPVEQQ
IAATAGDIDN SLSGIVSTSL DLVNSGDKQQ HETITQELNY FIRNIDYKLE YLKSNWGEFI
DEDLLSEVNV EAKKVLSMLE GNGSIQALKG RQLNFVSSTD QMLSQVEKDT QNLNQNMRAL
TDAVESVSKE VSNKAISDID AASINTLILV IVAIVVSIIV SIAVIRPLTQ SLAKVNNALN
ILASGNLTHK LDDTGHDEFA ELSKNCNRLV DSLRNLIQGI LDRSNQLAAA AEETSAITMQ
TTASIQEQKS QVDQVATATT ELSSSAQQVT TSADDALQQI KQADDEALHM RTIADENKQT
ILALADEVAK AGVVINKVHS DSASIGSILD VIRGIAEQTN LLALNAAIEA ARAGEQGRGF
AVVADEVRSL ASRTQDSTQE IQQMIEVLQQ GAQEAVSVME MGRAQASSCV DKTEQANIAL
ESISESVHQA HDSGTHIAHA AQEQNIVSQQ VSEKLEHIAA ISEETSTGAE QTAQSSHQVA
QLAEELQASV REFTV
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