More than 300 homologs were found in PanDaTox collection
for query gene Lcho_1623 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_1623  methyl-accepting chemotaxis sensory transducer  100 
 
 
454 aa  923    Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00717627 
 
 
-
 
NC_008825  Mpe_A3082  methyl-accepting chemotaxis sensory transducer  56.19 
 
 
448 aa  475  1e-133  Methylibium petroleiphilum PM1  Bacteria  normal  0.802467  normal  0.530433 
 
 
-
 
NC_012856  Rpic12D_0496  methyl-accepting chemotaxis sensory transducer  39.48 
 
 
470 aa  305  1.0000000000000001e-81  Ralstonia pickettii 12D  Bacteria  normal  normal  0.453159 
 
 
-
 
NC_010682  Rpic_0509  methyl-accepting chemotaxis sensory transducer  39.61 
 
 
470 aa  298  2e-79  Ralstonia pickettii 12J  Bacteria  normal  0.856427  normal  0.10181 
 
 
-
 
NC_012850  Rleg_1014  methyl-accepting chemotaxis sensory transducer  38.66 
 
 
482 aa  291  2e-77  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1554  methyl-accepting chemotaxis sensory transducer  38.99 
 
 
495 aa  290  3e-77  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A1954  methyl-accepting chemotaxis sensory transducer  42.43 
 
 
511 aa  286  5.999999999999999e-76  Burkholderia xenovorans LB400  Bacteria  normal  0.249155  normal  0.44726 
 
 
-
 
NC_010681  Bphyt_2304  methyl-accepting chemotaxis sensory transducer  37.55 
 
 
468 aa  284  2.0000000000000002e-75  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.816033 
 
 
-
 
NC_010622  Bphy_1275  methyl-accepting chemotaxis sensory transducer  42.74 
 
 
470 aa  283  6.000000000000001e-75  Burkholderia phymatum STM815  Bacteria  normal  normal  0.233006 
 
 
-
 
NC_009485  BBta_6912  methyl-accepting chemotaxis sensory transducer  37 
 
 
475 aa  276  8e-73  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.18628  normal  0.2896 
 
 
-
 
NC_008340  Mlg_1152  methyl-accepting chemotaxis sensory transducer  40.46 
 
 
484 aa  275  1.0000000000000001e-72  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.26629  normal 
 
 
-
 
NC_007802  Jann_2227  methyl-accepting chemotaxis sensory transducer  38.72 
 
 
481 aa  260  3e-68  Jannaschia sp. CCS1  Bacteria  normal  0.237535  normal 
 
 
-
 
NC_008789  Hhal_0535  methyl-accepting chemotaxis sensory transducer  35.88 
 
 
487 aa  253  5.000000000000001e-66  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_3236  methyl-accepting chemotaxis sensory transducer  34.29 
 
 
476 aa  248  1e-64  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.315544  n/a   
 
 
-
 
NC_008543  Bcen2424_5132  methyl-accepting chemotaxis sensory transducer  34.22 
 
 
468 aa  248  1e-64  Burkholderia cenocepacia HI2424  Bacteria  normal  0.202601  normal 
 
 
-
 
NC_010515  Bcenmc03_5149  methyl-accepting chemotaxis sensory transducer  34.22 
 
 
468 aa  248  2e-64  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.853292  normal 
 
 
-
 
NC_007492  Pfl01_3326  chemotaxis sensory transducer  40.59 
 
 
534 aa  212  1e-53  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4367  methyl-accepting chemotaxis sensory transducer  35.2 
 
 
524 aa  209  8e-53  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3480  methyl-accepting chemotaxis protein  37.2 
 
 
533 aa  207  3e-52  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0820031  n/a   
 
 
-
 
NC_007005  Psyr_3261  chemotaxis sensory transducer  36.61 
 
 
534 aa  207  3e-52  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2839  methyl-accepting chemotaxis sensory transducer  34.84 
 
 
546 aa  205  2e-51  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6911  methyl-accepting chemotaxis sensory transducer  48.94 
 
 
584 aa  201  1.9999999999999998e-50  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.900499  normal  0.411338 
 
 
-
 
NC_009656  PSPA7_4857  methyl-accepting chemotaxis protein  34.62 
 
 
535 aa  201  3e-50  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_55750  putative chemotaxis transducer  32.25 
 
 
538 aa  199  6e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2939  methyl-accepting chemotaxis sensory transducer  32.42 
 
 
696 aa  196  7e-49  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00000015868 
 
 
-
 
NC_007778  RPB_4274  methyl-accepting chemotaxis sensory transducer  50.58 
 
 
583 aa  195  2e-48  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_0467  methyl-accepting chemotaxis sensory transducer  33.96 
 
 
693 aa  194  2e-48  Geobacter bemidjiensis Bem  Bacteria  normal  0.285916  n/a   
 
 
-
 
NC_003910  CPS_3042  methyl-accepting chemotaxis protein  31.1 
 
 
527 aa  192  1e-47  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4172  methyl-accepting chemotaxis sensory transducer  46.81 
 
 
584 aa  191  2.9999999999999997e-47  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1286  methyl-accepting chemotaxis sensory transducer  48.26 
 
 
583 aa  190  4e-47  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03575  methyl-accepting chemotaxis protein  35.82 
 
 
525 aa  190  5e-47  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2723  methyl-accepting chemotaxis sensory transducer  32.4 
 
 
522 aa  187  3e-46  Shewanella putrefaciens CN-32  Bacteria  normal  0.471128  n/a   
 
 
-
 
NC_009483  Gura_4401  methyl-accepting chemotaxis sensory transducer  33.93 
 
 
695 aa  186  7e-46  Geobacter uraniireducens Rf4  Bacteria  normal  0.896591  n/a   
 
 
-
 
NC_012918  GM21_0484  methyl-accepting chemotaxis sensory transducer  33.69 
 
 
693 aa  186  8e-46  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000000150879 
 
 
-
 
NC_008321  Shewmr4_1155  methyl-accepting chemotaxis sensory transducer  32.96 
 
 
523 aa  185  1.0000000000000001e-45  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3064  methyl-accepting chemotaxis sensory transducer  32.35 
 
 
522 aa  185  2.0000000000000003e-45  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.0000000699577 
 
 
-
 
NC_008322  Shewmr7_1226  methyl-accepting chemotaxis sensory transducer  32.68 
 
 
523 aa  184  3e-45  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1156  methyl-accepting chemotaxis sensory transducer  32.68 
 
 
523 aa  184  4.0000000000000006e-45  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_1246  methyl-accepting chemotaxis sensory transducer  32.09 
 
 
522 aa  183  5.0000000000000004e-45  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1290  methyl-accepting chemotaxis sensory transducer  32.09 
 
 
522 aa  183  7e-45  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1153  methyl-accepting chemotaxis sensory transducer  34.44 
 
 
474 aa  182  7e-45  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_1324  methyl-accepting chemotaxis sensory transducer  31.82 
 
 
522 aa  182  1e-44  Shewanella baltica OS195  Bacteria  normal  normal  0.0159359 
 
 
-
 
NC_009511  Swit_3980  methyl-accepting chemotaxis sensory transducer  34.01 
 
 
468 aa  181  2e-44  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.330272 
 
 
-
 
NC_007925  RPC_4808  methyl-accepting chemotaxis sensory transducer  44.68 
 
 
584 aa  180  4e-44  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0582  methyl-accepting chemotaxis protein  33.91 
 
 
696 aa  180  5.999999999999999e-44  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6117  methyl-accepting chemotaxis sensory transducer  50 
 
 
713 aa  179  1e-43  Methylobacterium sp. 4-46  Bacteria  normal  0.140639  normal 
 
 
-
 
NC_010506  Swoo_3399  methyl-accepting chemotaxis sensory transducer  31.3 
 
 
526 aa  179  1e-43  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1808  methyl-accepting chemotaxis sensory transducer  31.44 
 
 
514 aa  178  1e-43  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1460  methyl-accepting chemotaxis sensory transducer  28.15 
 
 
534 aa  177  2e-43  Marinomonas sp. MWYL1  Bacteria  normal  0.695651  normal 
 
 
-
 
NC_010814  Glov_0385  methyl-accepting chemotaxis sensory transducer  32.17 
 
 
698 aa  177  3e-43  Geobacter lovleyi SZ  Bacteria  normal  0.0817491  n/a   
 
 
-
 
NC_003910  CPS_4961  methyl-accepting chemotaxis protein  33.43 
 
 
527 aa  172  7.999999999999999e-42  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0932  methyl-accepting chemotaxis sensory transducer  31.44 
 
 
707 aa  164  4.0000000000000004e-39  Geobacter lovleyi SZ  Bacteria  normal  0.1893  n/a   
 
 
-
 
NC_007298  Daro_0561  methyl-accepting chemotaxis sensory transducer  29.08 
 
 
505 aa  155  2e-36  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1985  methyl-accepting chemotaxis protein (MCP)  29.38 
 
 
715 aa  142  9.999999999999999e-33  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1958  methyl-accepting chemotaxis sensory transducer  28.04 
 
 
598 aa  141  1.9999999999999998e-32  Thauera sp. MZ1T  Bacteria  normal  0.57626  n/a   
 
 
-
 
NC_009483  Gura_4170  methyl-accepting chemotaxis sensory transducer  40.51 
 
 
578 aa  139  1e-31  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3097  methyl-accepting chemotaxis sensory transducer  31.07 
 
 
602 aa  137  4e-31  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1641  methyl-accepting chemotaxis sensory transducer  25.86 
 
 
480 aa  135  9.999999999999999e-31  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0715397  normal 
 
 
-
 
NC_011146  Gbem_2381  methyl-accepting chemotaxis sensory transducer  36.42 
 
 
578 aa  131  3e-29  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_0041  methyl-accepting chemotaxis sensory transducer  28.12 
 
 
573 aa  130  5.0000000000000004e-29  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1837  methyl-accepting chemotaxis sensory transducer  35.8 
 
 
578 aa  127  3e-28  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00718884 
 
 
-
 
NC_004578  PSPTO_2475  methyl-accepting chemotaxis protein  27.43 
 
 
598 aa  126  7e-28  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0390427  n/a   
 
 
-
 
NC_007953  Bxe_C0009  methyl-accepting chemotaxis sensory transducer  30.22 
 
 
511 aa  125  1e-27  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2241  histidine kinase, HAMP region: chemotaxis sensory transducer  26.03 
 
 
598 aa  119  9.999999999999999e-26  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.130389  normal  0.394001 
 
 
-
 
NC_010511  M446_6192  methyl-accepting chemotaxis sensory transducer  40.24 
 
 
573 aa  119  9.999999999999999e-26  Methylobacterium sp. 4-46  Bacteria  normal  0.361355  normal 
 
 
-
 
NC_013501  Rmar_0071  methyl-accepting chemotaxis sensory transducer  25.05 
 
 
525 aa  117  6e-25  Rhodothermus marinus DSM 4252  Bacteria  normal  0.603344  n/a   
 
 
-
 
NC_011894  Mnod_6711  methyl-accepting chemotaxis sensory transducer  43.79 
 
 
568 aa  114  5e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0534  methyl-accepting chemotaxis sensory transducer  27.06 
 
 
439 aa  95.5  2e-18  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3428  methyl-accepting chemotaxis sensory transducer  31.3 
 
 
667 aa  79  0.0000000000001  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0934  methyl-accepting chemotaxis sensory transducer  31.3 
 
 
667 aa  79  0.0000000000002  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  30.95 
 
 
564 aa  79  0.0000000000002  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3356  methyl-accepting chemotaxis sensory transducer  31.3 
 
 
667 aa  78.2  0.0000000000003  Shewanella baltica OS223  Bacteria  normal  0.386472  normal 
 
 
-
 
NC_009997  Sbal195_3553  methyl-accepting chemotaxis sensory transducer  31.73 
 
 
667 aa  78.2  0.0000000000003  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000971  methyl-accepting chemotaxis protein  32.54 
 
 
553 aa  77.4  0.0000000000005  Vibrio sp. Ex25  Bacteria  normal  0.370017  n/a   
 
 
-
 
NC_002967  TDE2142  methyl-accepting chemotaxis protein  32.74 
 
 
712 aa  76.3  0.000000000001  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE0619  methyl-accepting chemotaxis protein  33.93 
 
 
696 aa  75.9  0.000000000002  Treponema denticola ATCC 35405  Bacteria  decreased coverage  0.00139031  n/a   
 
 
-
 
NC_011989  Avi_0793  methyl-accepting chemotaxis protein  27.82 
 
 
740 aa  75.5  0.000000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_07022  histidine kinase  36.75 
 
 
553 aa  75.5  0.000000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008740  Maqu_0956  methyl-accepting chemotaxis sensory transducer  31.94 
 
 
676 aa  74.7  0.000000000003  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0996  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.17 
 
 
823 aa  74.7  0.000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_1215  methyl-accepting chemotaxis sensory transducer  38.28 
 
 
678 aa  74.3  0.000000000004  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_0767  putative methyl-accepting chemotaxis sensory transducer  33.78 
 
 
546 aa  74.3  0.000000000005  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0148  methyl-accepting chemotaxis sensory transducer  34.39 
 
 
651 aa  73.6  0.000000000006  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_0858  methyl-accepting chemotaxis sensory transducer with phytochrome sensor  30.43 
 
 
1406 aa  73.6  0.000000000007  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0185965  normal  0.079214 
 
 
-
 
NC_003910  CPS_0139  methyl-accepting chemotaxis protein  35.55 
 
 
650 aa  73.6  0.000000000008  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_002967  TDE0484  methyl-accepting chemotaxis protein  32.14 
 
 
706 aa  73.2  0.000000000009  Treponema denticola ATCC 35405  Bacteria  hitchhiker  0.00175726  n/a   
 
 
-
 
NC_007520  Tcr_0553  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  27.41 
 
 
888 aa  72.8  0.00000000001  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3242  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  28 
 
 
880 aa  73.2  0.00000000001  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_1434  chemotaxis sensory transducer  30.08 
 
 
530 aa  72  0.00000000002  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1064  methyl-accepting chemotaxis sensory transducer with GAF sensor  31.75 
 
 
879 aa  71.6  0.00000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.698769  hitchhiker  0.00000570114 
 
 
-
 
NC_002967  TDE1009  methyl-accepting chemotaxis protein  32.54 
 
 
697 aa  71.6  0.00000000002  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0452  methyl-accepting chemotaxis protein  27.51 
 
 
622 aa  72  0.00000000002  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3299  methyl-accepting chemotaxis sensory transducer  28.02 
 
 
554 aa  72  0.00000000002  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003063  methyl-accepting chemotaxis protein  35.66 
 
 
682 aa  71.6  0.00000000002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3266  methyl-accepting chemotaxis sensory transducer  36.3 
 
 
543 aa  71.6  0.00000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1789  chemotaxis sensory transducer  36.92 
 
 
546 aa  71.2  0.00000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.478165  decreased coverage  0.000703042 
 
 
-
 
NC_009439  Pmen_1998  methyl-accepting chemotaxis sensory transducer  45.74 
 
 
714 aa  71.2  0.00000000003  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0164438 
 
 
-
 
NC_009438  Sputcn32_0950  methyl-accepting chemotaxis sensory transducer  30.8 
 
 
667 aa  71.2  0.00000000003  Shewanella putrefaciens CN-32  Bacteria  normal  0.231949  n/a   
 
 
-
 
NC_009438  Sputcn32_1313  methyl-accepting chemotaxis sensory transducer  41 
 
 
675 aa  71.2  0.00000000003  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1539  methyl-accepting chemotaxis sensory transducer  30.77 
 
 
432 aa  71.2  0.00000000003  Conexibacter woesei DSM 14684  Bacteria  normal  0.457708  normal  0.831325 
 
 
-
 
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