Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3242 |
Symbol | |
ID | 4075384 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | + |
Start bp | 243791 |
End bp | 246433 |
Gene Length | 2643 bp |
Protein Length | 880 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 638004751 |
Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
Protein accession | YP_611478 |
Protein GI | 99078220 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein [COG2202] FOG: PAS/PAC domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTATCG ACAATACTGC TGCTGTGACC GACGCATCCG CGACGACGCC CACAGCGCAA GGCGAAGCAC AGGCCATGCT TGACGCGGTG AGCCGCGTTC ATGCGATGAT CGAGTTTGAA CTTGACGGAA CGATCCGGAC GGCGAACGAG AATTTTCTGA AAGTTACCGG CTACCAACTG GACGAAATCC GCGGCAAGCA CCACCGCATG TTCTGCGACC CAGACTACGT CGCTTCGGAT ACCTACAAGG ATTTCTGGCT ACAACTCGCG ATGGGACAAC CAGCCAGCGG CGAATTTCAC CGCATTGGCA ACGGCGGAAA AGACGTCTGG ATTGACGCTC ACTACACCCC GATCCTCGAT GCTGCGGGCA AGCCCTATAA GATTGTGAAG CTGGCAACCG ACATCACGGC CCAAAAAGAG AGTGAAGCGG TAAATCTGCG CCGTAGAGCC GGCTTTGAAC ACTCATCCGT GGCGATGATG ACAGTCGATC GCGATTTTGT TGTAAAAGAC ATCAATGCGG CGACAAACAC CTTGCTCGAT GAGTACAAGG ACGTGTTTTC AGAGGTTTGG CCCGGGTTCG ACCCGACCAA GATGATCGGC AGCTGTATTG ACCGGTTCCA CAAGAACCCG GCCCATCAGC GCAACCTTTT GTCTGATCCC AAAAATTTGC CGTTCAAAAC GGATATCACT GTTGGCGAAA TGAAGTTCGC ACTAAACGTT GACGGCATTT TTGATGATGA CGGAACCTAC GTCGGCAACC TTCTCGAATG GGCTGATGTC ACCGAAGCGC GCCTGAATGC GGGTGTTCTG AACGCATTGG ATCGTTCGCA GGCGATCATT GAATTCAAAC TCGATGGAAC CATCACAGCT GCGAACGAAA ATTTCCTCGC CGTGACCGGG TATGGACTGC AGGAGATCAA AGGTCAGAAA CACCGCATTT TTGTGGATGA GACGACTGCG AGCTCCACGG AATACAAAGA TTTCTGGCAA AGCCTCGCCC AGGGAGAAAC GCGAACCGGC GAATTCCGAC GCTTTGCAAA GGACGGTTCG GAACTGTGGA TCCAGGCAAC CTACAACCCC ATCTTTGACG GGAATGGCGA TGTCTTCAAG GTGGTGAAAT TCGCCGTTGA TATCACGGAC CAGATGAAAC TGCGCGAAAC CGCAAAGACT CTGTCATTGG TAGCAAATGA AACGGACAAC TCCGTCTTGA TCGCGGATGC GGACGGACGC ATCGAATATG TGAACCCGGG CTTCACCAAG CTCACTGGCC ACGAATACAA AGACGTCATT GGCAAGAAGC CCGGCGAACT CTTGCAGGGC CGCCACACAG ACCCCGAAAC GCGGAAACGG ATCCGCGAAA ACATCAATGC GCAAAAACCA TTCTACGATG AAATTCTCAA CTATACGAAG GATGGTGAAG CTTACTGGAT CTCTCTTGCG ATCAACCCGG TCTTTGACGA GGCAGGAAAG CTGCAGAAAT TCGTGTCAAT CCAGACCAAC ATCACGGATG TGAAGCTGCA ACAGCAGGAC TTCAACTGCA AGCTGGAAGC GATCTCCAAC GCCAGTGCAG TGATCGAGTT TACACCTGAT GGCAATGTCA TTGATGCCAA CGAGAATTTC TGCGCCACAA CTGGCTACAG CTTGGAAGAA ATCAAGGGCC GCCACCACCG GATGTTTTGC GAAAGAGATT ATGCCGCAAG CCCGGAGTAT ACCGCATTCT GGGAGCGTCT TCGCTCGGGT ATTTCGGACA CCGGGAAGTA CCAGCGCTTT GGCAAAGGGG AGAAGGAGAT CTGGCTCAGC GCATCCTACA GCCCGATTTT CGACCAGGAA AACAATGTTG TTAAAGTGGT CAAATTCGCC AACGACATTA CCACAGCCGT CGAACTGGAA CGCGAAGTAT CACGCATTGC CTCTGAATTT GTGACCCGCT CCGAAGACAT CTCGGGCCAG GCCAACAAAG TTGCAGAAGG TGCGCAATCG CTGGGCTGCA CAACAGAAGA AATCAGTGCA TCGATCGAAG AACTGAGTGC GTCCATCGAC TCGATCGCAC AGAACTCCAA ACATTCTGAT GACATCGCGC AGAGTACGCG GGACGAGGCA GATCTTGGCG CCAAAGCAAT TGAACGCTCG ATCGAGTCCA TGGAGCTGAT CAACTCTTCC TCCGAAGAGA TCAACGAGAT TGTCAAAGTC ATCAGCGAAA TCGCAAGCCA AACCAACCTC TTGGCGTTCA ATGCAGCAAT CGAAGCTGCG CGGGCTGGCG AACATGGTCT GGGCTTTTCG GTGGTGGCAG ACGAAGTGCG CAAACTCGCC GAGCGGTCGT CGCAAGCCAC GAAGGAGATC AGCAAACTGA TCAACGAAAC CGTGAAACGC GTCAGCCAGG GCAGCCAGGT TTCTATTGAG GCGGGGGACG CCTTTAAGAA GATCCTGAGC GGCATCAAGG ATACAACGGA CTCGATCAAG CAAATTTCGG TTGCAGCCCG CGAACAGCAA ACAGCTGCCC GGGATGTTTC GGATGCGATC CAGAATATCG TTGATGCCAC TGAGCAGGCC GTCATCGCCT CTGACGCCAT TGCAGCCTCG ACAAATGAGC TCAATGGCGG CGCACAAGAG CTTACTCAGG AAATTGCCAA ACTCGGTCAA TAA
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Protein sequence | MSIDNTAAVT DASATTPTAQ GEAQAMLDAV SRVHAMIEFE LDGTIRTANE NFLKVTGYQL DEIRGKHHRM FCDPDYVASD TYKDFWLQLA MGQPASGEFH RIGNGGKDVW IDAHYTPILD AAGKPYKIVK LATDITAQKE SEAVNLRRRA GFEHSSVAMM TVDRDFVVKD INAATNTLLD EYKDVFSEVW PGFDPTKMIG SCIDRFHKNP AHQRNLLSDP KNLPFKTDIT VGEMKFALNV DGIFDDDGTY VGNLLEWADV TEARLNAGVL NALDRSQAII EFKLDGTITA ANENFLAVTG YGLQEIKGQK HRIFVDETTA SSTEYKDFWQ SLAQGETRTG EFRRFAKDGS ELWIQATYNP IFDGNGDVFK VVKFAVDITD QMKLRETAKT LSLVANETDN SVLIADADGR IEYVNPGFTK LTGHEYKDVI GKKPGELLQG RHTDPETRKR IRENINAQKP FYDEILNYTK DGEAYWISLA INPVFDEAGK LQKFVSIQTN ITDVKLQQQD FNCKLEAISN ASAVIEFTPD GNVIDANENF CATTGYSLEE IKGRHHRMFC ERDYAASPEY TAFWERLRSG ISDTGKYQRF GKGEKEIWLS ASYSPIFDQE NNVVKVVKFA NDITTAVELE REVSRIASEF VTRSEDISGQ ANKVAEGAQS LGCTTEEISA SIEELSASID SIAQNSKHSD DIAQSTRDEA DLGAKAIERS IESMELINSS SEEINEIVKV ISEIASQTNL LAFNAAIEAA RAGEHGLGFS VVADEVRKLA ERSSQATKEI SKLINETVKR VSQGSQVSIE AGDAFKKILS GIKDTTDSIK QISVAAREQQ TAARDVSDAI QNIVDATEQA VIASDAIAAS TNELNGGAQE LTQEIAKLGQ
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