Gene TM1040_3242 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3242 
Symbol 
ID4075384 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp243791 
End bp246433 
Gene Length2643 bp 
Protein Length880 aa 
Translation table11 
GC content53% 
IMG OID638004751 
Productmethyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 
Protein accessionYP_611478 
Protein GI99078220 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein
[COG2202] FOG: PAS/PAC domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTATCG ACAATACTGC TGCTGTGACC GACGCATCCG CGACGACGCC CACAGCGCAA 
GGCGAAGCAC AGGCCATGCT TGACGCGGTG AGCCGCGTTC ATGCGATGAT CGAGTTTGAA
CTTGACGGAA CGATCCGGAC GGCGAACGAG AATTTTCTGA AAGTTACCGG CTACCAACTG
GACGAAATCC GCGGCAAGCA CCACCGCATG TTCTGCGACC CAGACTACGT CGCTTCGGAT
ACCTACAAGG ATTTCTGGCT ACAACTCGCG ATGGGACAAC CAGCCAGCGG CGAATTTCAC
CGCATTGGCA ACGGCGGAAA AGACGTCTGG ATTGACGCTC ACTACACCCC GATCCTCGAT
GCTGCGGGCA AGCCCTATAA GATTGTGAAG CTGGCAACCG ACATCACGGC CCAAAAAGAG
AGTGAAGCGG TAAATCTGCG CCGTAGAGCC GGCTTTGAAC ACTCATCCGT GGCGATGATG
ACAGTCGATC GCGATTTTGT TGTAAAAGAC ATCAATGCGG CGACAAACAC CTTGCTCGAT
GAGTACAAGG ACGTGTTTTC AGAGGTTTGG CCCGGGTTCG ACCCGACCAA GATGATCGGC
AGCTGTATTG ACCGGTTCCA CAAGAACCCG GCCCATCAGC GCAACCTTTT GTCTGATCCC
AAAAATTTGC CGTTCAAAAC GGATATCACT GTTGGCGAAA TGAAGTTCGC ACTAAACGTT
GACGGCATTT TTGATGATGA CGGAACCTAC GTCGGCAACC TTCTCGAATG GGCTGATGTC
ACCGAAGCGC GCCTGAATGC GGGTGTTCTG AACGCATTGG ATCGTTCGCA GGCGATCATT
GAATTCAAAC TCGATGGAAC CATCACAGCT GCGAACGAAA ATTTCCTCGC CGTGACCGGG
TATGGACTGC AGGAGATCAA AGGTCAGAAA CACCGCATTT TTGTGGATGA GACGACTGCG
AGCTCCACGG AATACAAAGA TTTCTGGCAA AGCCTCGCCC AGGGAGAAAC GCGAACCGGC
GAATTCCGAC GCTTTGCAAA GGACGGTTCG GAACTGTGGA TCCAGGCAAC CTACAACCCC
ATCTTTGACG GGAATGGCGA TGTCTTCAAG GTGGTGAAAT TCGCCGTTGA TATCACGGAC
CAGATGAAAC TGCGCGAAAC CGCAAAGACT CTGTCATTGG TAGCAAATGA AACGGACAAC
TCCGTCTTGA TCGCGGATGC GGACGGACGC ATCGAATATG TGAACCCGGG CTTCACCAAG
CTCACTGGCC ACGAATACAA AGACGTCATT GGCAAGAAGC CCGGCGAACT CTTGCAGGGC
CGCCACACAG ACCCCGAAAC GCGGAAACGG ATCCGCGAAA ACATCAATGC GCAAAAACCA
TTCTACGATG AAATTCTCAA CTATACGAAG GATGGTGAAG CTTACTGGAT CTCTCTTGCG
ATCAACCCGG TCTTTGACGA GGCAGGAAAG CTGCAGAAAT TCGTGTCAAT CCAGACCAAC
ATCACGGATG TGAAGCTGCA ACAGCAGGAC TTCAACTGCA AGCTGGAAGC GATCTCCAAC
GCCAGTGCAG TGATCGAGTT TACACCTGAT GGCAATGTCA TTGATGCCAA CGAGAATTTC
TGCGCCACAA CTGGCTACAG CTTGGAAGAA ATCAAGGGCC GCCACCACCG GATGTTTTGC
GAAAGAGATT ATGCCGCAAG CCCGGAGTAT ACCGCATTCT GGGAGCGTCT TCGCTCGGGT
ATTTCGGACA CCGGGAAGTA CCAGCGCTTT GGCAAAGGGG AGAAGGAGAT CTGGCTCAGC
GCATCCTACA GCCCGATTTT CGACCAGGAA AACAATGTTG TTAAAGTGGT CAAATTCGCC
AACGACATTA CCACAGCCGT CGAACTGGAA CGCGAAGTAT CACGCATTGC CTCTGAATTT
GTGACCCGCT CCGAAGACAT CTCGGGCCAG GCCAACAAAG TTGCAGAAGG TGCGCAATCG
CTGGGCTGCA CAACAGAAGA AATCAGTGCA TCGATCGAAG AACTGAGTGC GTCCATCGAC
TCGATCGCAC AGAACTCCAA ACATTCTGAT GACATCGCGC AGAGTACGCG GGACGAGGCA
GATCTTGGCG CCAAAGCAAT TGAACGCTCG ATCGAGTCCA TGGAGCTGAT CAACTCTTCC
TCCGAAGAGA TCAACGAGAT TGTCAAAGTC ATCAGCGAAA TCGCAAGCCA AACCAACCTC
TTGGCGTTCA ATGCAGCAAT CGAAGCTGCG CGGGCTGGCG AACATGGTCT GGGCTTTTCG
GTGGTGGCAG ACGAAGTGCG CAAACTCGCC GAGCGGTCGT CGCAAGCCAC GAAGGAGATC
AGCAAACTGA TCAACGAAAC CGTGAAACGC GTCAGCCAGG GCAGCCAGGT TTCTATTGAG
GCGGGGGACG CCTTTAAGAA GATCCTGAGC GGCATCAAGG ATACAACGGA CTCGATCAAG
CAAATTTCGG TTGCAGCCCG CGAACAGCAA ACAGCTGCCC GGGATGTTTC GGATGCGATC
CAGAATATCG TTGATGCCAC TGAGCAGGCC GTCATCGCCT CTGACGCCAT TGCAGCCTCG
ACAAATGAGC TCAATGGCGG CGCACAAGAG CTTACTCAGG AAATTGCCAA ACTCGGTCAA
TAA
 
Protein sequence
MSIDNTAAVT DASATTPTAQ GEAQAMLDAV SRVHAMIEFE LDGTIRTANE NFLKVTGYQL 
DEIRGKHHRM FCDPDYVASD TYKDFWLQLA MGQPASGEFH RIGNGGKDVW IDAHYTPILD
AAGKPYKIVK LATDITAQKE SEAVNLRRRA GFEHSSVAMM TVDRDFVVKD INAATNTLLD
EYKDVFSEVW PGFDPTKMIG SCIDRFHKNP AHQRNLLSDP KNLPFKTDIT VGEMKFALNV
DGIFDDDGTY VGNLLEWADV TEARLNAGVL NALDRSQAII EFKLDGTITA ANENFLAVTG
YGLQEIKGQK HRIFVDETTA SSTEYKDFWQ SLAQGETRTG EFRRFAKDGS ELWIQATYNP
IFDGNGDVFK VVKFAVDITD QMKLRETAKT LSLVANETDN SVLIADADGR IEYVNPGFTK
LTGHEYKDVI GKKPGELLQG RHTDPETRKR IRENINAQKP FYDEILNYTK DGEAYWISLA
INPVFDEAGK LQKFVSIQTN ITDVKLQQQD FNCKLEAISN ASAVIEFTPD GNVIDANENF
CATTGYSLEE IKGRHHRMFC ERDYAASPEY TAFWERLRSG ISDTGKYQRF GKGEKEIWLS
ASYSPIFDQE NNVVKVVKFA NDITTAVELE REVSRIASEF VTRSEDISGQ ANKVAEGAQS
LGCTTEEISA SIEELSASID SIAQNSKHSD DIAQSTRDEA DLGAKAIERS IESMELINSS
SEEINEIVKV ISEIASQTNL LAFNAAIEAA RAGEHGLGFS VVADEVRKLA ERSSQATKEI
SKLINETVKR VSQGSQVSIE AGDAFKKILS GIKDTTDSIK QISVAAREQQ TAARDVSDAI
QNIVDATEQA VIASDAIAAS TNELNGGAQE LTQEIAKLGQ