More than 300 homologs were found in PanDaTox collection
for query gene Pmen_1780 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_1780  cyclic nucleotide-binding protein  100 
 
 
156 aa  316  7.999999999999999e-86  Pseudomonas mendocina ymp  Bacteria  normal  0.489231  normal 
 
 
-
 
NC_010501  PputW619_3891  cyclic nucleotide-binding protein  68.21 
 
 
155 aa  213  8e-55  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1573  cyclic nucleotide-binding  63.58 
 
 
158 aa  205  2e-52  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.490025  hitchhiker  0.00990577 
 
 
-
 
NC_007492  Pfl01_1398  cyclic nucleotide-binding protein  61.29 
 
 
157 aa  199  9.999999999999999e-51  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.908167  normal 
 
 
-
 
NC_004578  PSPTO_3912  cyclic nucleotide-binding protein  63.38 
 
 
144 aa  194  4.0000000000000005e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.262178  n/a   
 
 
-
 
NC_012918  GM21_1866  putative transcriptional regulator, Crp/Fnr family  34.03 
 
 
182 aa  84.7  4e-16  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  36.11 
 
 
225 aa  80.1  0.000000000000009  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  35.25 
 
 
225 aa  79.3  0.00000000000002  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  34.53 
 
 
228 aa  78.2  0.00000000000004  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  33.09 
 
 
251 aa  77.8  0.00000000000005  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_007498  Pcar_0452  cAMP-binding protein  32.74 
 
 
160 aa  75.9  0.0000000000002  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000000000045265  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  30.28 
 
 
231 aa  74.7  0.0000000000004  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  34.82 
 
 
225 aa  74.3  0.0000000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_010505  Mrad2831_0617  cyclic nucleotide-binding protein  37.07 
 
 
577 aa  73.9  0.0000000000008  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.340501  normal 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  34.82 
 
 
225 aa  73.9  0.0000000000008  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0894  cyclic nucleotide-binding  33.87 
 
 
226 aa  73.6  0.000000000001  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_6450  putative transcriptional regulator, Crp/Fnr family  38.53 
 
 
253 aa  72.8  0.000000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  31.58 
 
 
228 aa  72.8  0.000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_0173  cyclic nucleotide-binding domain-containing protein  34.59 
 
 
211 aa  72.8  0.000000000002  Polaromonas sp. JS666  Bacteria  normal  0.106244  normal 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  30.99 
 
 
226 aa  70.9  0.000000000007  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  35.59 
 
 
224 aa  70.9  0.000000000007  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_5025  putative transcriptional regulator, Crp/Fnr family  32.05 
 
 
1056 aa  70.1  0.00000000001  Spirosoma linguale DSM 74  Bacteria  decreased coverage  0.00524189  normal 
 
 
-
 
NC_007948  Bpro_0234  cyclic nucleotide-binding domain-containing protein  29.68 
 
 
186 aa  70.1  0.00000000001  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2419  cyclic nucleotide-binding protein  31.25 
 
 
563 aa  68.9  0.00000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.871595  normal 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  28.47 
 
 
228 aa  68.6  0.00000000003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0419  cyclic nucleotide-binding protein  29.66 
 
 
209 aa  68.6  0.00000000003  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0411  cyclic nucleotide-binding protein  29.66 
 
 
209 aa  68.6  0.00000000003  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  29.1 
 
 
226 aa  67.8  0.00000000005  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  32.76 
 
 
228 aa  66.2  0.0000000001  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  30.22 
 
 
220 aa  67  0.0000000001  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_008752  Aave_0636  cyclic nucleotide-binding protein  29.17 
 
 
212 aa  67  0.0000000001  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  27.46 
 
 
225 aa  66.2  0.0000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  29.93 
 
 
225 aa  65.9  0.0000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_0296  cyclic nucleotide-binding protein  30.67 
 
 
624 aa  65.9  0.0000000002  Frankia sp. EAN1pec  Bacteria  normal  normal  0.339618 
 
 
-
 
NC_008554  Sfum_1513  cyclic nucleotide-binding protein  32.35 
 
 
308 aa  65.9  0.0000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.00604424  normal 
 
 
-
 
NC_008786  Veis_1689  cyclic nucleotide-binding protein  26.27 
 
 
212 aa  65.1  0.0000000003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.792602 
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  30.07 
 
 
227 aa  64.7  0.0000000005  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  27.42 
 
 
247 aa  64.3  0.0000000006  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  29.75 
 
 
238 aa  63.9  0.0000000007  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_002967  TDE2725  cyclic nucleotide binding/GGDEF domain-containing protein  29.46 
 
 
322 aa  63.5  0.000000001  Treponema denticola ATCC 35405  Bacteria  normal  0.792666  n/a   
 
 
-
 
NC_008781  Pnap_0277  cyclic nucleotide-binding protein  28.81 
 
 
210 aa  63.2  0.000000001  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  32.56 
 
 
239 aa  63.2  0.000000001  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0750  Crp/FNR family transcriptional regulator  27.94 
 
 
238 aa  62.4  0.000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_0772  cyclic nucleotide-binding protein  30.6 
 
 
164 aa  62.8  0.000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  33.64 
 
 
219 aa  62.8  0.000000002  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_008048  Sala_1169  Crp/FNR family transcriptional regulator  34.86 
 
 
227 aa  62.4  0.000000002  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0303416  normal  0.0506186 
 
 
-
 
NC_008261  CPF_2845  cyclic nucleotide-binding domain-containing protein  29.2 
 
 
226 aa  62.8  0.000000002  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2531  cyclic nucleotide-binding domain-containing protein  27.94 
 
 
226 aa  62.4  0.000000002  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3692  cyclic nucleotide-binding domain-containing protein  35.79 
 
 
146 aa  62  0.000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3831  cyclic nucleotide-binding protein  27.78 
 
 
435 aa  62  0.000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0387698 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  32.82 
 
 
236 aa  62  0.000000003  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_007908  Rfer_3511  Crp/FNR family transcriptional regulator  33.33 
 
 
233 aa  62.4  0.000000003  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4730  cyclic nucleotide-binding protein  29.5 
 
 
286 aa  62  0.000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.813554  normal  0.722063 
 
 
-
 
NC_010002  Daci_1067  cyclic nucleotide-binding protein  31.31 
 
 
210 aa  62.4  0.000000003  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.314176 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  26.87 
 
 
224 aa  62  0.000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  30.7 
 
 
226 aa  61.6  0.000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_002939  GSU1992  Crp/FNR family transcriptional regulator  30.43 
 
 
226 aa  61.2  0.000000005  Geobacter sulfurreducens PCA  Bacteria  normal  0.103472  n/a   
 
 
-
 
NC_009727  CBUD_1472  CAAX amino terminal protease family  31.73 
 
 
381 aa  61.2  0.000000005  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.407531  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  27.7 
 
 
243 aa  61.2  0.000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  29.51 
 
 
224 aa  60.8  0.000000006  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2323  CRP/FNR family transcriptional regulator  28.12 
 
 
233 aa  60.8  0.000000006  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00053006  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  29.82 
 
 
225 aa  61.2  0.000000006  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0161  cyclic nucleotide-binding protein  35.71 
 
 
583 aa  60.8  0.000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.102095  n/a   
 
 
-
 
NC_009636  Smed_0098  CRP/FNR family transcriptional regulator  31.03 
 
 
234 aa  60.8  0.000000007  Sinorhizobium medicae WSM419  Bacteria  normal  0.2435  normal 
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  28.67 
 
 
252 aa  60.5  0.000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_008312  Tery_2905  cyclic nucleotide-binding protein  34.86 
 
 
157 aa  60.5  0.000000008  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0600936 
 
 
-
 
NC_008060  Bcen_1929  Crp/FNR family transcriptional regulator  28.91 
 
 
235 aa  60.5  0.000000009  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.589711  n/a   
 
 
-
 
NC_008542  Bcen2424_2541  Crp/FNR family transcriptional regulator  28.91 
 
 
235 aa  60.5  0.000000009  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.000812643  n/a   
 
 
-
 
NC_007947  Mfla_1926  cyclic nucleotide-binding domain-containing protein  26.49 
 
 
168 aa  60.1  0.00000001  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4598  cyclic nucleotide-binding protein  35.78 
 
 
581 aa  60.1  0.00000001  Methylobacterium sp. 4-46  Bacteria  normal  0.0649502  normal  0.461096 
 
 
-
 
NC_006348  BMA2266  transcriptional regulator, putative  32.54 
 
 
251 aa  59.7  0.00000002  Burkholderia mallei ATCC 23344  Bacteria  normal  0.578468  n/a   
 
 
-
 
NC_007434  BURPS1710b_1089  cyclic nucleotide-binding protein  32.54 
 
 
251 aa  59.7  0.00000002  Burkholderia pseudomallei 1710b  Bacteria  normal  0.30583  n/a   
 
 
-
 
NC_007604  Synpcc7942_0127  Crp/FNR family transcriptional regulator  32.73 
 
 
222 aa  59.3  0.00000002  Synechococcus elongatus PCC 7942  Bacteria  normal  0.867755  normal  0.325855 
 
 
-
 
NC_009076  BURPS1106A_0938  cyclic nucleotide-binding protein  32.54 
 
 
251 aa  59.7  0.00000002  Burkholderia pseudomallei 1106a  Bacteria  normal  0.914927  n/a   
 
 
-
 
NC_007651  BTH_I0747  transcriptional regulator, putative  31.45 
 
 
266 aa  59.3  0.00000002  Burkholderia thailandensis E264  Bacteria  normal  0.59923  n/a   
 
 
-
 
NC_009074  BURPS668_0934  cyclic nucleotide-binding  32.54 
 
 
251 aa  59.7  0.00000002  Burkholderia pseudomallei 668  Bacteria  normal  0.059861  n/a   
 
 
-
 
NC_009080  BMA10247_2143  putative transcriptional regulator  32.54 
 
 
251 aa  59.7  0.00000002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  28.47 
 
 
225 aa  59.7  0.00000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  32.04 
 
 
225 aa  59.3  0.00000002  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_008346  Swol_1598  hypothetical protein  30.19 
 
 
407 aa  59.3  0.00000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.303519  n/a   
 
 
-
 
NC_002967  TDE2616  cyclic nucleotide-binding protein  33.02 
 
 
219 aa  58.5  0.00000003  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3203  cyclic nucleotide-binding protein  35.11 
 
 
165 aa  58.9  0.00000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0755  Crp/FNR family transcriptional regulator  29.69 
 
 
235 aa  58.5  0.00000003  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.027549  normal  0.149867 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  31.3 
 
 
226 aa  58.5  0.00000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_3367  Crp/FNR family transcriptional regulator  26.67 
 
 
230 aa  58.5  0.00000003  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  37.63 
 
 
224 aa  58.2  0.00000004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  27.39 
 
 
242 aa  58.2  0.00000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_010508  Bcenmc03_2565  Crp/FNR family transcriptional regulator  28.91 
 
 
235 aa  58.2  0.00000004  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0695171  normal  0.0307054 
 
 
-
 
NC_008312  Tery_1557  Crp/FNR family transcriptional regulator  28.08 
 
 
234 aa  58.2  0.00000004  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.986178 
 
 
-
 
NC_014248  Aazo_3421  Crp/Fnr family transcriptional regulator  28.21 
 
 
232 aa  58.2  0.00000004  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4460  putative transcriptional regulator, Crp/Fnr family  28.37 
 
 
171 aa  57.8  0.00000005  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_1546  cyclic nucleotide-regulated small mechanosensitive ion channel  27.41 
 
 
479 aa  57.8  0.00000005  Cyanothece sp. PCC 7425  Bacteria  normal  0.514924  normal 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  29.66 
 
 
226 aa  57.8  0.00000006  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_011145  AnaeK_2607  cyclic nucleotide-binding protein  30.97 
 
 
215 aa  57.8  0.00000006  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_5417  cyclic nucleotide-binding protein  27.86 
 
 
419 aa  57.4  0.00000007  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0881735  normal  0.0681678 
 
 
-
 
NC_013037  Dfer_0691  transcriptional regulator, Crp/Fnr family  30.19 
 
 
214 aa  57.4  0.00000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.275069  normal 
 
 
-
 
NC_011884  Cyan7425_0841  cyclic nucleotide-binding protein  27.78 
 
 
160 aa  57  0.00000008  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.108052 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  29.09 
 
 
231 aa  57.4  0.00000008  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_011894  Mnod_3195  cyclic nucleotide-binding protein  33.96 
 
 
598 aa  57.4  0.00000008  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  28.68 
 
 
228 aa  56.6  0.0000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
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