Gene TDE2725 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE2725 
Symbol 
ID2740944 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp2782330 
End bp2783298 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content41% 
IMG OID637161622 
Productcyclic nucleotide binding/GGDEF domain-containing protein 
Protein accessionNP_973323 
Protein GI42528225 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.792666 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAGCT CAAAACAAAG ATGGCTTGAA ATTTTACAAA AAGCACGGCT TTTTGCTCAT 
CTTTCGATAA AAGAAATAGA AGTCTTGGCT GAAGCTATGT TTTATTCCGA ATTTGAAGCG 
GGCCAAGCCT TGGTTTATGA AGGTGAATCG GGCAATGAGC TTTTTATCAT TGTAAAAGGT 
ACTATTTCCG TTTCGGTAAA ATCCGAAGGG AAAGAAATTG AACTTGTCCG TCTTGGAGCG 
GGAGATTTTT TCGGTGAAAT GGCTATGCTC GAACAAGAGC ACCGTTCGGC AACCTGCAAG 
GCTGTAGAAT CCACCTCCTG CCTTGTTTTA AAATCTCAAG ATTTTTCTTC CCTTATTATA 
GACCAACCGA AAATCGCTTC AACGGTTTTG TACAATATGC TTAAAATCAC CGGCGGACGT 
TTAAGTAAGA CGGACGGCCT CTTATCGCAG ATAATCCGAT GGGGTGATGA TGCAAAAAGA 
AGAGCCATTA CCGACGAGTT TACAGGACTT TATAATAGAA GATATTTAGA TGAGTCCTTT 
GAAAGCCTTC TTAAACGCTG TGTCCGTCAG CACATCGGTG TAAGTTTTGC TATGGTGGAT 
ATCGATCACT TTGGCCAGCT TAACAGAGAT TATGGAGCCG TCTTTTGCGA CAAGGTCCTG 
CTGGCCATTG TCGAAGTTTT TAAACGTAAT TTTGATACCG ACGATATTTT AATCCGGTAC 
GGAGGGGATG AGTTTTCCTT TATTATCAGA GGAATGTTGG AAAGAGCCGA ATATCAGTGC 
AAAAGAGTAT GTACCGAAGT TAATGCTTTA ACCTTTCAAG AGCATCCCGA GTTACGAGTA 
TCATGCTCAA TCGGCCTTGC CGTATATGAC GAAAAGATGA CTACACCAGA ACTCTTAAAA 
TTTTCCGATA CAGCCCTTTA TTCCGCTAAA GAGGGCGGCA GAAACAGGGT CTTTGTTTAT 
AAAAAATAG
 
Protein sequence
MNSSKQRWLE ILQKARLFAH LSIKEIEVLA EAMFYSEFEA GQALVYEGES GNELFIIVKG 
TISVSVKSEG KEIELVRLGA GDFFGEMAML EQEHRSATCK AVESTSCLVL KSQDFSSLII 
DQPKIASTVL YNMLKITGGR LSKTDGLLSQ IIRWGDDAKR RAITDEFTGL YNRRYLDESF 
ESLLKRCVRQ HIGVSFAMVD IDHFGQLNRD YGAVFCDKVL LAIVEVFKRN FDTDDILIRY 
GGDEFSFIIR GMLERAEYQC KRVCTEVNAL TFQEHPELRV SCSIGLAVYD EKMTTPELLK 
FSDTALYSAK EGGRNRVFVY KK