95 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Sfri_0324  CDS  NC_008345  353180  354991  1812  GTP-binding protein TypA  YP_749025  decreased coverage  1.0951e-05  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0375  CDS  NC_008345  406639  407154  516  shikimate kinase I  YP_749076  decreased coverage  0.00773873  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0376  CDS  NC_008345  407163  408239  1077  3-dehydroquinate synthase  YP_749077  decreased coverage  0.00801427  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0454  CDS  NC_008345  519783  520745  963  putative TIM-barrel protein, nifR3 family protein  YP_749154  decreased coverage  2.30608e-08  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0503  CDS  NC_008345  569378  570421  1044  porin  YP_749202  decreased coverage  0.00290192  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0550  CDS  NC_008345  634530  636623  2094  elongation factor G  YP_749249  decreased coverage  0.000265126  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0611  CDS  NC_008345  713278  715599  2322  TonB-dependent receptor  YP_749309  decreased coverage  7.5991e-05  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0647  CDS  NC_008345  749965  752007  2043  transketolase  YP_749345  decreased coverage  4.64673e-05  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0651  CDS  NC_008345  755881  757221  1341  MATE efflux family protein  YP_749349  decreased coverage  0.000388571  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0652  CDS  NC_008345  757337  758077  741  hypothetical protein  YP_749350  decreased coverage  3.54938e-07  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0671  CDS  NC_008345  783843  784667  825  CDP-diacylglycerol--serine O-phosphatidyltransferase  YP_749369  decreased coverage  4.62707e-07  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0700  CDS  NC_008345  826095  826565  471  rRNA large subunit methyltransferase  YP_749396  decreased coverage  6.37083e-09  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0717  CDS  NC_008345  841979  843070  1092  GTP-dependent nucleic acid-binding protein EngD  YP_749413  decreased coverage  0.000164209  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0842  CDS  NC_008345  989013  991100  2088  endothelin-converting protein 1  YP_749533  decreased coverage  4.83693e-06  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0911  CDS  NC_008345  1071053  1071766  714  pseudouridine synthase, Rsu  YP_749602  decreased coverage  0.000299595  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0912  CDS  NC_008345  1071831  1072787  957  transcriptional regulator, LysR family protein  YP_749603  decreased coverage  0.000235744  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0925  CDS  NC_008345  1089382  1090494  1113  permease YjgP/YjgQ family protein  YP_749616  decreased coverage  0.000914337  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_0954  CDS  NC_008345  1114694  1115941  1248  Na(+)-translocating NADH-quinone reductase subunit F  YP_749645  decreased coverage  0.000185689  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1030  CDS  NC_008345  1213058  1214155  1098  RND family efflux transporter MFP subunit  YP_749721  decreased coverage  1.01532e-07  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1038  CDS  NC_008345  1222975  1223451  477  6,7-dimethyl-8-ribityllumazine synthase  YP_749729  decreased coverage  1.46191e-09  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1048  CDS  NC_008345  1233437  1234804  1368  23S rRNA 5-methyluridine methyltransferase  YP_749739  decreased coverage  0.00366869  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1049  CDS  NC_008345  1234926  1237196  2271  (p)ppGpp synthetase I, SpoT/RelA  YP_749740  decreased coverage  1.45818e-05  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1173  CDS  NC_008345  1381888  1383333  1446  flagellin domain-containing protein  YP_749864  decreased coverage  0.000144043  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1198  CDS  NC_008345  1408830  1409711  882  cobyrinic acid a,c-diamide synthase  YP_749889  decreased coverage  0.000520334  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1271  CDS  NC_008345  1505093  1505944  852  elongation factor Ts  YP_749962  decreased coverage  2.59112e-05  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1334  CDS  NC_008345  1587851  1588498  648  outer membrane protein W  YP_750025  decreased coverage  0.000150593  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1482  CDS  NC_008345  1771278  1772132  855  transcriptional regulator, LysR family protein  YP_750172  decreased coverage  7.99068e-05  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1552  CDS  NC_008345  1848215  1848775  561  D,D-heptose 1,7-bisphosphate phosphatase  YP_750241  decreased coverage  7.57194e-08  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1645  CDS  NC_008345  1955140  1955463  324  hypothetical protein  YP_750334  decreased coverage  1.02791e-05  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1646  CDS  NC_008345  1955674  1956555  882  hypothetical protein  YP_750335  decreased coverage  6.84999e-05  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1748  CDS  NC_008345  2056608  2056949  342  glutaredoxin-like protein  YP_750436  decreased coverage  4.25193e-09  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1761  CDS  NC_008345  2069029  2070213  1185  DegT/DnrJ/EryC1/StrS aminotransferase  YP_750449  decreased coverage  8.63071e-06  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1796  CDS  NC_008345  2119334  2119978  645  outer membrane lipoprotein carrier protein LolA  YP_750484  decreased coverage  1.78972e-07  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1864  CDS  NC_008345  2204215  2205099  885  dihydrodipicolinate synthase  YP_750550  decreased coverage  3.415e-08  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1865  CDS  NC_008345  2205104  2206201  1098  NlpB/DapX family lipoprotein  YP_750551  decreased coverage  8.07402e-08  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_1943  CDS  NC_008345  2306879  2307364  486  transcriptional regulator, MarR family protein  YP_750627  decreased coverage  0.0012648  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2009  CDS  NC_008345  2382688  2383140  453  hypothetical protein  YP_750693  decreased coverage  5.79412e-07  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2010  CDS  NC_008345  2383411  2384838  1428  cbb3-type cytochrome c oxidase subunit I  YP_750694  decreased coverage  5.23358e-07  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2090  CDS  NC_008345  2485904  2489320  3417  hypothetical protein  YP_750774  decreased coverage  0.00173694  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2160  CDS  NC_008345  2573958  2576351  2394  TonB-dependent receptor, plug  YP_750844  decreased coverage  0.00475664  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2171  CDS  NC_008345  2596956  2598854  1899  diguanylate cyclase/phosphodiesterase  YP_750855  decreased coverage  1.55509e-06  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2191  CDS  NC_008345  2619920  2621722  1803  hypothetical protein  YP_750875  decreased coverage  0.000298084  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2192  CDS  NC_008345  2621700  2622830  1131  hypothetical protein  YP_750876  decreased coverage  5.50171e-07  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2251  CDS  NC_008345  2696721  2697428  708  leucyl/phenylalanyl-tRNA--protein transferase  YP_750935  decreased coverage  2.07532e-08  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2272  CDS  NC_008345  2718713  2719480  768  hypothetical protein  YP_750956  decreased coverage  0.000140028  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2273  CDS  NC_008345  2719484  2719834  351  putative nitrogen regulatory protein P-II  YP_750957  decreased coverage  0.000994598  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2274  CDS  NC_008345  2719831  2720235  405  signal-transduction protein  YP_750958  decreased coverage  0.000468461  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2345  CDS  NC_008345  2793816  2795582  1767  succinate dehydrogenase flavoprotein subunit  YP_751029  decreased coverage  0.00170465  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2389  CDS  NC_008345  2850826  2853321  2496  DNA internalization-related competence protein ComEC/Rec2  YP_751072  decreased coverage  0.00142105  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2399  CDS  NC_008345  2860423  2863959  3537  transcription-repair coupling factor  YP_751082  decreased coverage  0.00178528  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2492  CDS  NC_008345  2978727  2978939  213  hypothetical protein  YP_751175  decreased coverage  0.00401591  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2656  CDS  NC_008345  3189889  3190404  516  3-hydroxydecanoyl-(acyl carrier protein) dehydratase  YP_751335  decreased coverage  0.00470265  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2702  CDS  NC_008345  3246408  3247532  1125  queuine tRNA-ribosyltransferase  YP_751381  decreased coverage  6.54614e-06  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2703  CDS  NC_008345  3247675  3248715  1041  S-adenosylmethionine:tRNA ribosyltransferase-isomerase  YP_751382  decreased coverage  7.4202e-07  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2748  CDS  NC_008345  3304237  3304986  750  electron transfer flavoprotein beta-subunit  YP_751427  decreased coverage  2.23089e-05  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2763  CDS  NC_008345  3318883  3320280  1398  MgtE intracellular region  YP_751442  decreased coverage  0.00201718  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2766  CDS  NC_008345  3325621  3326592  972  phosphate binding protein  YP_751445  decreased coverage  0.00366631  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2791  CDS  NC_008345  3356950  3357555  606  heat shock protein GrpE  YP_751470  decreased coverage  1.03997e-08  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2830  CDS  NC_008345  3411263  3412366  1104  dTDP-glucose 4,6-dehydratase  YP_751508  decreased coverage  0.00106167  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2831  CDS  NC_008345  3412382  3413197  816  hypothetical protein  YP_751509  decreased coverage  0.000150593  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2857  CDS  NC_008345  3441041  3441868  828  integrase catalytic subunit  YP_751535  decreased coverage  2.84719e-08  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2888  CDS  NC_008345  3472019  3472462  444  peptidylprolyl isomerase, FKBP-type  YP_751566  decreased coverage  0.00669754  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2917  CDS  NC_008345  3507622  3507975  354  50S ribosomal protein L19  YP_751595  decreased coverage  5.37691e-06  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2972  CDS  NC_008345  3570873  3572411  1539  peptidase M23B  YP_751650  decreased coverage  0.000246824  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_2996  CDS  NC_008345  3595767  3597611  1845  RNA polymerase, sigma 70 subunit, RpoD  YP_751674  decreased coverage  0.000465174  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3026  CDS  NC_008345  3634028  3634207  180  hypothetical protein  YP_751703  decreased coverage  3.78483e-05  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3151  CDS  NC_008345  3771194  3772288  1095  glycine cleavage system aminomethyltransferase T  YP_751826  decreased coverage  0.000770906  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3262  CDS  NC_008345  3903918  3904880  963  hypothetical protein  YP_751937  decreased coverage  3.77474e-06  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3276  CDS  NC_008345  3921337  3921780  444  transcriptional regulators, TraR/DksA family protein  YP_751951  decreased coverage  7.8623e-07  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3277  CDS  NC_008345  3921921  3922802  882  glutamate--tRNA ligase  YP_751952  decreased coverage  5.1469e-06  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3317  CDS  NC_008345  3963714  3964259  546  oligoribonuclease  YP_751992  decreased coverage  0.000232212  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3318  CDS  NC_008345  3964372  3965433  1062  ribosome-associated GTPase  YP_751993  decreased coverage  0.00153777  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3360  CDS  NC_008345  4008849  4009277  429  50S ribosomal protein L13  YP_752035  decreased coverage  8.92865e-08  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3361  CDS  NC_008345  4009541  4010653  1113  AFG1 family ATPase  YP_752036  decreased coverage  7.32022e-06  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3450  CDS  NC_008345  4103830  4104096  267  transposase IS3/IS911 family protein  YP_752120  decreased coverage  4.13069e-08  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3451  CDS  NC_008345  4104163  4104909  747  integrase catalytic subunit  YP_752121  decreased coverage  3.48389e-07  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3613  CDS  NC_008345  4289579  4291735  2157  peptidyl-dipeptidase Dcp  YP_752279  decreased coverage  4.60509e-05  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3660  CDS  NC_008345  4339965  4341602  1638  chaperonin GroEL  YP_752326  decreased coverage  0.000280031  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3661  CDS  NC_008345  4341660  4341950  291  co-chaperonin GroES  YP_752327  decreased coverage  1.31471e-06  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3662  CDS  NC_008345  4342165  4343595  1431  MATE efflux family protein  YP_752328  decreased coverage  3.89251e-07  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3714  CDS  NC_008345  4406509  4408413  1905  DEAD/DEAH box helicase domain-containing protein  YP_752380  decreased coverage  0.00250632  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3721  CDS  NC_008345  4420099  4421478  1380  peptidase U62, modulator of DNA gyrase  YP_752387  decreased coverage  1.90523e-07  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3738  CDS  NC_008345  4443010  4444059  1050  rod shape-determining protein MreB  YP_752404  decreased coverage  4.9309e-07  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3775  CDS  NC_008345  4492187  4493617  1431  dihydrolipoamide dehydrogenase  YP_752441  decreased coverage  4.42431e-06  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3776  CDS  NC_008345  4493817  4495814  1998  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase  YP_752442  decreased coverage  0.000518885  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3915  CDS  NC_008345  4674010  4676154  2145  periplasmic sensor signal transduction histidine kinase  YP_752579  decreased coverage  0.00135351  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3916  CDS  NC_008345  4676157  4677545  1389  two component, sigma54 specific, transcriptional regulator, Fis family protein  YP_752580  decreased coverage  2.03856e-05  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3992  CDS  NC_008345  4761018  4761608  591  NLP/P60 protein  YP_752656  decreased coverage  8.56339e-06  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_3993  CDS  NC_008345  4761669  4762253  585  transcriptional regulator, TetR family protein  YP_752657  decreased coverage  1.02791e-05  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_R0076  tRNA  NC_008345  2596094  2596169  76  tRNA-Asn    decreased coverage  5.96623e-10  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_R0077  tRNA  NC_008345  2596203  2596278  76  tRNA-Asn    decreased coverage  4.77509e-10  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_R0079  tRNA  NC_008345  2596407  2596482  76  tRNA-Asn    decreased coverage  5.05976e-10  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_R0080  tRNA  NC_008345  2596516  2596591  76  tRNA-Asn    decreased coverage  3.90034e-10  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_R0091  tRNA  NC_008345  3174416  3174491  76  tRNA-Gly    decreased coverage  0.000341409  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
Sfri_R0114  tRNA  NC_008345  3597796  3597872  77  tRNA-Met    decreased coverage  0.00121971  n/a    Shewanella frigidimarina NCIMB 400  Bacteria 
 
 
-
 
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