| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3662 |
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| Symbol | |
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| ID | 4280555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4342165 |
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| End bp | 4343595 |
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| Gene Length | 1431 bp |
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| Protein Length | 476 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638136475 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_752328 |
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| Protein GI | 114564814 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000389251 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGACA GACACGGGTT GCTCAGCGCA CCTATTGGTC GTGTACTGCT TAACATGACT
TTGCCTAACC TGATTGGGAT TATGACCATT CTAGGTGGCA GTCTGGTGGA CATTTTTTTT
ATTAGCCAGT TGGGTACAGA TGCACTGGCA GCAGTGAGCT TTACGTTTCC GGTAACCTTA
GTCATCACTA GTATCGGCAT TGGCATTGGC GCGGGTGTGT CTACCAATCT TGGCCGCTTG
ATTGGCTCTG GCCACGCGCC CGAATCCAGA GTGTTTTTAT TTGATGCCTT GTGCATGACA
CTGCTTATTA TTTGGGGTTT GTCGATACTG GGTTGTGTGT TTATTGAACC TATTTTCAGT
TTACTTGGGG CCAACAGTGC CAGTTTGCCA TTAATTAACG ACTACATGTG GTACTGGTAT
TTAGGCGCTC CGGCATTGGT GTTGTTAATG GTGGGTAATC AAGCCTTACG CGCCACGGGT
GACACCCACT CACCGGCTAA AATTATGATG TTAGCCGCGA TTGTAAACTT GATCCTCGAC
CCGTTACTTA TCTTCGGCAT TGGCCCTTTT CCGCGTTTAG AAATTCAAGG CGCTGCTATT
GCGACCACAC TATCCTGGTT AGTGGCAATG TCATTAGCGG GCCACTTAAT TATTGTCAAA
CGTAAACTGG TTCAGTTTAC TGAGTTTGAT GTGGGTCGAT TAATTTTACA TTGGAAAGTC
TTATCCCATA TTGCTCGCCC TGCCGCATTA ATGAATGTGA TTAATCCTAT TGCCAACGGC
ATTATAATGG CGATGTTGGC ACGGATTGAT CATGCTGGTG TGGCTGCTTT TGGTGCTGGA
ATTAGGCTTG AGTCGGTACT GTTGATTGTG GTGATGGCAC TGTCGTCGAG TTTAATGCCG
TTTATTGCCC AAAATTTAGG TGCCAGCCAA CCTGATCGCG CCAAAAAAGC CTTATTGATG
TCGTTGCGAT TTGCTTTTGT ATTTCAAACA ATCTTGTTTA TTCCGCTGTA TTTTTATGCC
GAACCTATCG CAAGATTGTT TACTCACGAC CCACTGGTTA TTGAGTGGCT GAGTTTTTAT
ATTATGGTGT TGCCTGCCTC TTATGGGCCA CTTGCCATTG TTATTATGGT TGCCACTAGC
TTAAATGCTT ACCATAGGCC GTTGAGTTCA CTGGTGATTA ACTTGTGCCG CTTAATGTTA
TTAATGTTAC CGCTGGCGGC GCTAGGCTCG TATGTTGGTG GGGTGAAAGG GATTTTATTG
GCGTTACCCA TTGCTAATAC ATTGATGGGG ATAGCTTGCT ATTACCTTGC GACGCAAATT
AGCGAGCCAA AAGAGATTAA GCACACTGTG CCTTGTTCAG ATAACTCAAT AGCTACAGAC
GGCGAACAAG ACGATACCAA TAAATCAGCC TCTCGCCTTG GCGAATATTA A
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| Protein sequence | MKDRHGLLSA PIGRVLLNMT LPNLIGIMTI LGGSLVDIFF ISQLGTDALA AVSFTFPVTL
VITSIGIGIG AGVSTNLGRL IGSGHAPESR VFLFDALCMT LLIIWGLSIL GCVFIEPIFS
LLGANSASLP LINDYMWYWY LGAPALVLLM VGNQALRATG DTHSPAKIMM LAAIVNLILD
PLLIFGIGPF PRLEIQGAAI ATTLSWLVAM SLAGHLIIVK RKLVQFTEFD VGRLILHWKV
LSHIARPAAL MNVINPIANG IIMAMLARID HAGVAAFGAG IRLESVLLIV VMALSSSLMP
FIAQNLGASQ PDRAKKALLM SLRFAFVFQT ILFIPLYFYA EPIARLFTHD PLVIEWLSFY
IMVLPASYGP LAIVIMVATS LNAYHRPLSS LVINLCRLML LMLPLAALGS YVGGVKGILL
ALPIANTLMG IACYYLATQI SEPKEIKHTV PCSDNSIATD GEQDDTNKSA SRLGEY
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