Gene Sfri_3317 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3317 
Symbol 
ID4280219 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp3963714 
End bp3964259 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content39% 
IMG OID638136138 
Productoligoribonuclease 
Protein accessionYP_751992 
Protein GI114564478 
COG category[A] RNA processing and modification 
COG ID[COG1949] Oligoribonuclease (3'->5' exoribonuclease) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.000232212 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGTTG ATGCGAATAA TCTAATTTGG GTTGATTTGG AAATGACAGG CTTAGAACCA 
GATGTCGATC GAGTCATTGA AATTGCAACC TTAGTGACCG ATCAAGAACT CAATATCATT 
GCTCAAGGCC CTGTTCTAGC CATTTATCAG ACCGATGAAG TACTAGCAGG CATGGATGAT 
TGGAACCAAA AACATCACGG AGAGTCTGGA TTAGTTGACC GTGTGCGTGC CAGTAAATGT 
TCTGAACAAG ATGCGATAGC ACAAACGATT GATTTTTTAG CTCAGTACGT GCCTAAAGGC 
GCATCGCCAA TGTGCGGTAA TAGTATTGGT CAAGATCGTC GCTTTTTGAA TAAGTACATG 
TTGGAACTTG AAGAGTTCTT TCATTATCGC AATATTGATG TCAGCACAGT TAAAGAATTG 
GTTCGTCGTT GGAGTCCTGA AACAATGAAT GGCTTCAGCA AGAAAAATAC TCACCAAGCA 
TTAGAAGATA TTAAGGAATC TATTGCTGAA ATGCAGTTTT ATCGCAAAGA AGTATTTAAA 
ATTTAA
 
Protein sequence
MAVDANNLIW VDLEMTGLEP DVDRVIEIAT LVTDQELNII AQGPVLAIYQ TDEVLAGMDD 
WNQKHHGESG LVDRVRASKC SEQDAIAQTI DFLAQYVPKG ASPMCGNSIG QDRRFLNKYM 
LELEEFFHYR NIDVSTVKEL VRRWSPETMN GFSKKNTHQA LEDIKESIAE MQFYRKEVFK 
I