Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0611 |
Symbol | |
ID | 4278533 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 713278 |
End bp | 715599 |
Gene Length | 2322 bp |
Protein Length | 773 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638133368 |
Product | TonB-dependent receptor |
Protein accession | YP_749309 |
Protein GI | 114561796 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01168] Gram-positive signal peptide, YSIRK family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000075991 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTCGA GTAATTACAG TAAGTTATCA TTAGGTGCTC AAGCTGTTGC TGCAGCATTA GTATTCAGTA GCCCAGCGCT ATATGCCGCA GACACCAAAA ATGAAACTTG TGATAAGGAT ATATTGGCAA AATGTAAACC AGCGCAAACA GACGAATCTA TTGAGCGAAT TCGTGTTCAT GGTGTGCAAA ACTCGGTTTA CATGTTTAAT AACTCAGCCG ACAAACGCCG TATGGCTGCA CTTGTCGATA CGCCGCAAGT GATTACCGTG TTAACTCAAG ACCAAATTCA AGAGTCAGGA AATACGGACT TAAAAGACAT TTTGTCAGCT CAAGCGGGTG TTACTCTTGG TACTGGTGAA AACGGTAATG CATTCGGTGA TCGTTATATT ATCCGTGGCC ACGAAGCACG TAGTGACGTG TTTGTTGATG GACTTCGCGA CCCTGGCATG ACCACTCGCG AAAGTTTTGC TACCGAGCGA GTTGAAATTA CCAAAGGTCC AAGTTCAACA TTTGCTGGCC GTGGTTCATC AGGTGGTGCC ATTAATAGTG TGACTAAAAA AGCCTCAGTA GCTTACGATT TTGGTCGCGT CGATTTGGGT ATTGGTACTG ACGATCACAC TCGTCTAACG GTGGACTATA ACTTACCGAT ATCAGACAAA GTGGCAGTAC GCCTTAACGG ATTAACGGCT GAAGAAGACA AACCGGGCCG CGAAGGTATT ACGAGTGAAC GCCAAGGTGT TCAGTTATCG GGTGTGTATG AAGCCACCGA TGCATTGTCG TTTACTGCCG ATGGTTACTA CCTAGACGCG AAAGATGTGC CAGATTTAGG CAGTTATTTT GATCGAGATA CTCGTAAGCC GCTAGAAGAT ATTCCTGTTT ATGCTCAAGA TGGTGATTTT CTAAATTCTA AGGTCACCAC GTTCACTTTA CGTACCGAAT ATGAGTTAAA TGACAGCATT ACGTTGTACA ACGCCACACG CGTTGGACAT ACCGAAAATG GCTATATTAC AACAGGGATG GGCGGCACAA CGCGCGCAGA TACCGACCCA ACAGCGCCTG GAGCAAGCAC GTTAACGCTT AGTACTCACC AAGGTAACCA AGATGTTGAT TATGTCAGCA CTCAATTCAA TTTATTTTGG AACACCCAAG CACTTGGTTT TGATCACAAG TTAGTGTTTG GCCTTGAATA CACAGATGAA AATGTTGATA ACGGCGTATA TAGCATCACC AACAATAATG ATGGTAATTG TTTGACCGAG GGTCGCCGTG GTGTATCAGA GGCTTATTGT ATTATTGATG GTAACGGCAA TACTGTCGAC AATATCGGCC AGTTAATGAA TCGCAGCTAT GTTGATGGTG GATCTGATGC TATATACGAC ATCGAAACCG TGTCGGCATA CATGATGGAT ACGGTTGAAT TGACCGATCA GTTAGCACTA TTCTTTGGTT TTAGACAAGA CAGCTTTGAT TACAGTAACA ACACAACAGG TCGCGATGGT GAAGTGGATT ATGCCTATTC CGATACCATG TATAACGGTA ATATTGGCTT AGTTTATGAC TTGTCTGAAG ATGCCAATAT CTACGCCAAC TACAGTACTG CAACCAACAT CAACGGCGGA GAGTCTGATT TAGGTGCTAA CTGTGGTTAC GGTGGTATTT GTGGTACGCA AGAGCAAGCT GCTGAAGCTG ATGCCGAAAT TGTTGAAAAC CTAGAGCTCG GTACCAAGTG GATGTTGTTT GATGACAAAA TGATGTTTTC GGCATCGATT TTCCAAATCA CTAAAAGTGA TGTAATGGAA AGTGTTGGCG ACAGTTACTC AACGCTAGGT ACACTTAACA CGGGTAAAAA CCGCGTTAAA GGCATTGAGT TTGGCATGGT CGGCAATATT ACTGACAAGC TCAGCATACA ATTCTCGGCT GCCAAAATGG ATTCAGAAAT TTTAGAGTCT TACAATCCAG CTAACATTGG TTTAGTACTA AGTAACTTTG CTGACGAAAG TGCTTATTTG CAACTGCGTT ATGAGCTAAC CGAATCATTT GTATTTGGTG GTAGCTACAC TTATCAAAGT GAAATGTATG GCGGACAACC AGACACTGCA GCAGGTTATG ATAGCGACAA TAGCCGTTAC AGCATTGTGG TGCCTAACTA TCAAGTAGTT GATTTATTTG CCAGTTACAA TGCCACTGAG GATTTAACTT TCCGCATAAA CGTAGGTAAC ATATTGAACG AAGAATATTG GACTGCAGCT TATCGTTCTG GCTCATTTAT GTACTTAGGT GACGCCCGTA ATGCTAAATT GTCGATGACA TATGAGTTTT AA
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Protein sequence | MKSSNYSKLS LGAQAVAAAL VFSSPALYAA DTKNETCDKD ILAKCKPAQT DESIERIRVH GVQNSVYMFN NSADKRRMAA LVDTPQVITV LTQDQIQESG NTDLKDILSA QAGVTLGTGE NGNAFGDRYI IRGHEARSDV FVDGLRDPGM TTRESFATER VEITKGPSST FAGRGSSGGA INSVTKKASV AYDFGRVDLG IGTDDHTRLT VDYNLPISDK VAVRLNGLTA EEDKPGREGI TSERQGVQLS GVYEATDALS FTADGYYLDA KDVPDLGSYF DRDTRKPLED IPVYAQDGDF LNSKVTTFTL RTEYELNDSI TLYNATRVGH TENGYITTGM GGTTRADTDP TAPGASTLTL STHQGNQDVD YVSTQFNLFW NTQALGFDHK LVFGLEYTDE NVDNGVYSIT NNNDGNCLTE GRRGVSEAYC IIDGNGNTVD NIGQLMNRSY VDGGSDAIYD IETVSAYMMD TVELTDQLAL FFGFRQDSFD YSNNTTGRDG EVDYAYSDTM YNGNIGLVYD LSEDANIYAN YSTATNINGG ESDLGANCGY GGICGTQEQA AEADAEIVEN LELGTKWMLF DDKMMFSASI FQITKSDVME SVGDSYSTLG TLNTGKNRVK GIEFGMVGNI TDKLSIQFSA AKMDSEILES YNPANIGLVL SNFADESAYL QLRYELTESF VFGGSYTYQS EMYGGQPDTA AGYDSDNSRY SIVVPNYQVV DLFASYNATE DLTFRINVGN ILNEEYWTAA YRSGSFMYLG DARNAKLSMT YEF
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