| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2345 |
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| Symbol | sdhA |
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| ID | 4279257 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2793816 |
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| End bp | 2795582 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135142 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_751029 |
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| Protein GI | 114563516 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00170465 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGTATTC CAGTACGCGA ATTTGATGTA ATCGTAATCG GCGCCGGCGG CGCGGGTATG
CGAGCTGCAT TACAGATTTC TAAAGAAGGT AAGAGCTGTG CGCTGTTATC TAAAGTATTC
CCAACTCGTT CACATACCGT TTCTGCTCAA GGTGGCATCA CTGTAGCATT AGGTAATGCG
CACGAAGATC ATTGGGAACA ACACATGTAC GACACGGTTA AAGGTTCTGA TTTTATCGGC
GACCAAGAAG CCATTGAGTT TATGTGTCAA ACGGGTCCTG AAGCGATTAT CGAACTTGAG
CAAATGGGTT TACCTTTCTC TCGTTTCGAA GACGGCACTA TCTATCAGCG TCCTTTTGGT
GGTCAGTCGC GTAATTTTGG TGGTGAGCAA GCTGCTCGTA CTGCTGCTGC AGCTGACCGT
ACAGGTCATG CACTGCTTCA TTGTTTATAC CAACAAAACG TTAAACATAA AACTGACGTT
TATTCTGAGT GGTATGCCTT AGATTTGGTT AAAAACGAAG ATGACGTAGT GGTGGGTTGT
ACTGCAATTG AAATTGAAAC GGGCGAAATT GTTTATTTCA AAGCAAAAGC GACTATTTTA
GCCACTGGTG GTGCAGGACG TATTTATGCA TCAACCACTA ATGCTCACAT CAATACTGGT
GACGGTGTTG GTATGGCGGC ACGCGCTGGT GTTCAGTTAC AAGACATGGA AATGTGGCAG
TTCCACCCTA CAGGTATTGC CGGTGCAGGT GTTTTGGTTA CTGAAGGTTG TCGTGGTGAA
GGTGGATATC TTCTAAACAA AGACGGCGAG CGTTTCATGG AACGTTATGC GCCAAACGCG
AAAGATTTAG CATCTCGTGA CGTGGTAGCA CGTTCAATGA TGACTGAAAT TCGTGAAGGT
CGTGGTTTAG ACGGTCCTTT AGGTCCACAT TGTTTGCTAA AACTTGATCA TTTAGGTAAA
GAAACCTTAG AAGCTCGTCT TCCTGGTGTG TGTGAATTAT CACGTACCTT TGCTCATATT
GATCCAGCTG ATGGTCCAAT TCCAGTGTTG CCAACTTGTC ATTATATGAT GGGCGGTTTA
CCGACTAAAG TAAGTGGTCA AGTTATTCGT ATGAATGACG ACGGCACTGA ACAAGATGTA
TTAGGTTTAT TTGCTGTTGG TGAGATTGCT TGTGTATCTG TACACGGTGC AAACCGTTTA
GGTGGTAACT CTTTACTTGA TTTAGTTGTG TTTGGACGTG CTGCTGGTCA GCATTTAGGT
AAAGCGTTAG ACGCTACACC TGATCCAAAA GCGGCTTCAG ACGTAGAAAT TAGTGCATCA
CTTGCTCGTC TTAATCGTTG GGAAAGCAAC AAAGACGGCG AAGAACCTGC GGTTATCCGT
AAAGATCTTC AATTGTGTAT GCAGTTAAAT TTCTCTGTTT TCCGCAGTGG AGATGCTATG
GCTGAAGGTT TAGAACAGCT ACAAGCAATT CAAAAGCGTC TTGAAAATGC TAAGTTATCT
GATAATTCAA CAGAATTTAA TACTCAACGT ATTGAGTGCT TAGAATTAGA CAACTTAATG
GCTACAGCGC TGGCAACTGC TTATGCAGCT AACTTCCGTA CTGAAAGCCG TGGTGCGCAT
TCTCGTGAAG ATTATTTAGA CCGTGATGAT GATAATTGGT TATGTCATAG TTTGTATAAC
CCAGTCACTC AAGGTATGAG CAAACGTGAT GTCAACATGA CACCTAAATT ACGTGAAGCG
TTTCCACCTG TAAAACGTAC CTATTAG
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| Protein sequence | MSIPVREFDV IVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA
HEDHWEQHMY DTVKGSDFIG DQEAIEFMCQ TGPEAIIELE QMGLPFSRFE DGTIYQRPFG
GQSRNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTDV YSEWYALDLV KNEDDVVVGC
TAIEIETGEI VYFKAKATIL ATGGAGRIYA STTNAHINTG DGVGMAARAG VQLQDMEMWQ
FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG
RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL
PTKVSGQVIR MNDDGTEQDV LGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG
KALDATPDPK AASDVEISAS LARLNRWESN KDGEEPAVIR KDLQLCMQLN FSVFRSGDAM
AEGLEQLQAI QKRLENAKLS DNSTEFNTQR IECLELDNLM ATALATAYAA NFRTESRGAH
SREDYLDRDD DNWLCHSLYN PVTQGMSKRD VNMTPKLREA FPPVKRTY
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