Gene Sfri_3915 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3915 
Symbol 
ID4280806 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp4674010 
End bp4676154 
Gene Length2145 bp 
Protein Length714 aa 
Translation table11 
GC content41% 
IMG OID638136736 
Productperiplasmic sensor signal transduction histidine kinase 
Protein accessionYP_752579 
Protein GI114565065 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00135351 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGTGCATT CTACTGGTAT TTTTACGCGA GTTTTTGGTA TTAGTTGGCA GCAAATGCAG 
GCCAAAGTGC GTTATCGCAT TTTGTTTTTG ACATCATTAC CTATTTTATT AACCTTAGTT
AGCTTGGTGT TTATTACCAT TTATTGGAAT GTAATATACA CAGGTAAACA ATTGTTTATG
AAGGTAAAGG CTGACTTGGT TGTCGCGAAT AGTACTTTAG TGCAAGTGCA GGAACGCCAA
CAAGATAAGC TCGACTCGAT AAGTGAATCA TGGGATTTTC AACATGCATT TAGGCTAATA
AAACACAGTG ATCAACAACC AAATCCGAGT GCGATTAGTG CGTTAAATAT GCTATTGGCG
CAACAGCAAA AAGAATTAGG TTTAGACTTT TTACGTTTAA TTAGTGTTGC CGATGCCGCT
GGAGACCCTG ATTTACGTTT GATGTTACAT CAAACCAAAC AGAAGGTTTT TTCGGGGTTA
ATGGTATTGC CAGCAAAACG CCTCGAAAGA ATTAACTCAA GTTTAGCAAA ACAAGCTCAA
ATTACATTGA TCCCGACATT GCATGCGAAA AAACCTAAGC AAAGCATGGA AACCCGTGGC
TTATTAAGCC GAACTCTACT GCCAATAGCC GACCAGTCGG GAAATGTATT TTGGTATTTA
GATGGTGGGA TGTTGTTTAA TCACAATACT GACATAGTCG ATAATATTCG TGACTTGGTG
TATGGCAAAG GCACGTTGCC TGAACGTTCA ATCGGTACTG TAACCCTTTT TCTGGATAAT
ATTCGCATTA GTACCAATGT ACCGATGGAG CTATTTCCTA AAGACAGCAA TAAACCCAAT
AGAGCCTTGG GGACCTTAGT GTCTGATGAG GTTTATCAGC AAGTACTCAT TGAAGGCCAA
ACGTGGATAA ATCGCGCCTT TGTTCTTAAT GATTGGTATA TCTCGGGTTA CCTTCCTTTA
CTCGATGTTC GTGGTAAAAG GATTGGGATG GTGTATGCCG GCTTTTCTGA GTCGCCTTTT
TTACATAACT ATTTACTCAA TATTATCGAG CTCGGCACCA TTTTAGTTTT CGTATTATTA
ATTTCAGGTT TTTTGGTTTA TCGCGGCGCG AACAGTTTGC TACAACCTAT TGAATATATT
CACCAAGTTG TTACTGCGGT ACAGTCTGGT CGAAATATCA GAATTGGTAA ACTAGACATG
AATGGTGATA ACGAACTAGC ACATTTAGCG GAGCAATTTG ATCGAATGTT AGATCAGTTG
CAGCGAAGAA ATGCTCAAAT TCAAGCGGCA GCAGAGCAGC TAGAAATCAA AGTTGAACAA
CGAACCCGCA GCTTGCAAGA TAAAACAGAA GAGCTCGAAC GCAATGTGGC GTTGTTGCAT
GCCACCAGAC AGCAATTAGT GACTAACGAA AAACTCACCG CACTAGGCGA ACTGATTGCT
GGTATTGCCC ACGAAATTAA TAATCCTACA GCCGTTATCT TGGGAAACAT GGAGCTATTA
AAATATGAAC TCGGTGACAA CGCTGCAATA GTCGAAGAAG AAATTGAATT GGTTATTCAA
CAAGTCGGTA GGATAACGAC TATCATCCGT AGCCTGCTGC AATATAGCCG TCCTGGTGAG
TTTAATGCGC CAATAACATT ACAACCTGTG ACGCCAATCG TTGAAGAAAT GCTGTTATTA
GCTCGTCACT CTATTGAGCA ACAAGAAGTG AAGTTGATTA AGGAGTTTAC GGCTACAGGT
TCAGTAGAAG TCAATCGACC TCAGCTATTA CAAGTGCTGA TTAACTTAAT GGTTAATGCT
GCCCATGCGA TTGAGAATAA AGGTCGAATT TGGCTACGAA CTTACGACTG GCTAGAAGAC
GGAATCGCTA TTGGGGTAAA AATTGAAGTT GAAGATGAAG GGATGGGGAT TTCGAAACAA
GATTTGAGTC GTATCTTTGA TCCATTTTAT ACCACCCGTA AAGATGGTAC TGGTTTAGGG
TTATCTCTGA GTTATGGGAT TATTAAACGA CTTGGCGGTA CGATTGAAGT GAATTCGACG
GTAGGAAAAG GCACCATATT TACCATTGGG CTTTACCATA AAGCAAAAGA TGATCAGCAG
CTTGGGCCTT ATGAAGGCTT ACATTTTGGT GACAGAACAC AGTAA
 
Protein sequence
MVHSTGIFTR VFGISWQQMQ AKVRYRILFL TSLPILLTLV SLVFITIYWN VIYTGKQLFM 
KVKADLVVAN STLVQVQERQ QDKLDSISES WDFQHAFRLI KHSDQQPNPS AISALNMLLA
QQQKELGLDF LRLISVADAA GDPDLRLMLH QTKQKVFSGL MVLPAKRLER INSSLAKQAQ
ITLIPTLHAK KPKQSMETRG LLSRTLLPIA DQSGNVFWYL DGGMLFNHNT DIVDNIRDLV
YGKGTLPERS IGTVTLFLDN IRISTNVPME LFPKDSNKPN RALGTLVSDE VYQQVLIEGQ
TWINRAFVLN DWYISGYLPL LDVRGKRIGM VYAGFSESPF LHNYLLNIIE LGTILVFVLL
ISGFLVYRGA NSLLQPIEYI HQVVTAVQSG RNIRIGKLDM NGDNELAHLA EQFDRMLDQL
QRRNAQIQAA AEQLEIKVEQ RTRSLQDKTE ELERNVALLH ATRQQLVTNE KLTALGELIA
GIAHEINNPT AVILGNMELL KYELGDNAAI VEEEIELVIQ QVGRITTIIR SLLQYSRPGE
FNAPITLQPV TPIVEEMLLL ARHSIEQQEV KLIKEFTATG SVEVNRPQLL QVLINLMVNA
AHAIENKGRI WLRTYDWLED GIAIGVKIEV EDEGMGISKQ DLSRIFDPFY TTRKDGTGLG
LSLSYGIIKR LGGTIEVNST VGKGTIFTIG LYHKAKDDQQ LGPYEGLHFG DRTQ