Gene Sfri_1038 details

Gene Information

• Locus tag: Sfri_1038
• Symbol: ribH
• ID: 4277852
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 1222975
• End bp: 1223451
• Gene Length: 477 bp
• Protein Length: 158 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 638133806
• Product: 6,7-dimethyl-8-ribityllumazine synthase
• Protein accession: YP_749729
• Protein GI: 114562216
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0054] Riboflavin synthase beta-chain
• TIGRFAM ID: [TIGR00114] 6,7-dimethyl-8-ribityllumazine synthase

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.00000000146191
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGTAG TTCAAGGTAA TATCGAAGCG AAAAATGCCA AAGTGGCGAT CGTAATATCG 
CGATTCAATA GCTTTTTAGT TGAAAGTCTG CTTGATGGTG CAATAGACAC ATTAAAGCGT 
TTCGGCCAGG TCAGTGACGA CAACATTACT GTTGTTCGCG TACCTGGTGC AGTTGAATTA 
CCACTTGCTG CAAAACGTGT GGCTGCAAGT GGAAAGTTTG ACGGTATCAT TGCATTAGGT 
GCTGTCATTC GTGGCGGTAC ACCTCATTTT GAATTTGTTG CTGGTGAATG TAACAAAGGT 
CTTGCACAAG TTGCATTAGA GTATGATCTT CCTGTTTCAT TCGGTGTATT AACTACAGAT 
ACCATTGAAC AAGCTATTGA GCGTTCAGGT ACTAAAGCAG GTAATAAAGG TGGCGAAGCA 
GCCCTTAGTT TGCTTGAAAT GGTTAATGTA CTGCAACAAC TAGAACAACA GCTGTAA 

 

Protein sequence

MNVVQGNIEA KNAKVAIVIS RFNSFLVESL LDGAIDTLKR FGQVSDDNIT VVRVPGAVEL 
PLAAKRVAAS GKFDGIIALG AVIRGGTPHF EFVAGECNKG LAQVALEYDL PVSFGVLTTD 
TIEQAIERSG TKAGNKGGEA ALSLLEMVNV LQQLEQQL