| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3992 |
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| Symbol | |
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| ID | 4280883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4761018 |
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| End bp | 4761608 |
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| Gene Length | 591 bp |
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| Protein Length | 196 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638136813 |
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| Product | NLP/P60 protein |
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| Protein accession | YP_752656 |
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| Protein GI | 114565142 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00000856339 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTTTTC GGGGTTTGGA GTGGGTTGAA TTGGCTAAAA GATTATTGTT TAGTTGTTTA
GTGCTGTTGT TGTCTGCGTG TGCGTCTTCT CCTGTTGTGG TTGTCGCACC TAAGCCCGTG
GTGGTTCCTC CCATGCTTAA GCCAGAACCT CCCAAGTGGA GTGAGTCAAA CCTATTGAGT
TTTCATAACC AATGGAAAGG CACTCCATAT CGTTTAGGTG GCCTGAGTAG AAATGGCGTA
GATTGTTCAG GGTTTGTGTA TTTAGCCTAC CTGAATATTG TTGGCGACAA GTTGCCTCGT
ACTGTGAACT CTCAACGTAT TTTAGGCAAA GAAGTACCGC GTAATCAGTT ACAGACTGGC
GATTTAGTTT TTTTTAAAAC CAATCGAACC GTTCGTCATG TCGGTATTTA CATGGGCAAT
GACCGATTTT TACATGCCTC GACTAAAAAA GGGGTAAAAA TTTCGAGTTT AAATAATATC
TATTGGAAGC CTCGTTTTTG GTTTGCAAAA CGCTTAAAAA AACCAACAGT TGAACAAAAT
ATGTCGATCG CCAGCTTGGT TGAGCATGTT CAGCAGCAAG ACGATTTATA A
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| Protein sequence | MIFRGLEWVE LAKRLLFSCL VLLLSACASS PVVVVAPKPV VVPPMLKPEP PKWSESNLLS
FHNQWKGTPY RLGGLSRNGV DCSGFVYLAY LNIVGDKLPR TVNSQRILGK EVPRNQLQTG
DLVFFKTNRT VRHVGIYMGN DRFLHASTKK GVKISSLNNI YWKPRFWFAK RLKKPTVEQN
MSIASLVEHV QQQDDL
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