Gene Sfri_2888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2888 
Symbol 
ID4279793 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp3472019 
End bp3472462 
Gene Length444 bp 
Protein Length147 aa 
Translation table11 
GC content43% 
IMG OID638135708 
Productpeptidylprolyl isomerase, FKBP-type 
Protein accessionYP_751566 
Protein GI114564052 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1047] FKBP-type peptidyl-prolyl cis-trans isomerases 2 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00669754 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACAGATT TAAGTAAGCA AGACAGTCAT TCATTAATAT GTCATATGAA TATAGTACTG 
GAAGACGGCT CCACAGCCGA CAGTACAAAA TCATCTGGTA AACCTTCACG TTTAAATATT 
GGTGACGGTA GCCTAAGTCC GGCTTTTGAA GACGAACTGA AAGACTTGAA AGAAGGTGAT 
AAGCACATAT TTACCTTAGC GGCAAAAGAC GCTTTTGGTG AGTCAAATCC TGATGCGATT 
CATTATATGG ACAGAAGCCG CTTTCCTGCA GATATGAAGC TTGAAGACGG CGTGATTGTC 
AGTTTTGCGG GGCCTGGTGG GAGTGAAATA CCGGGTATCG TTCGCGATAC TGCTGGTGAT 
TCAATTACCG TCGATTTAAA CCATCCCCTC GCAGGACGCA CACTTACATT TGAACTTGAA 
GTTGTCAGTG TCATAACTGA GTAA
 
Protein sequence
MTDLSKQDSH SLICHMNIVL EDGSTADSTK SSGKPSRLNI GDGSLSPAFE DELKDLKEGD 
KHIFTLAAKD AFGESNPDAI HYMDRSRFPA DMKLEDGVIV SFAGPGGSEI PGIVRDTAGD 
SITVDLNHPL AGRTLTFELE VVSVITE