| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0911 |
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| Symbol | |
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| ID | 4278615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1071053 |
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| End bp | 1071766 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638133677 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_749602 |
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| Protein GI | 114562089 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000299595 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGTCTA AACGAGGTCG ACTTGACCAA TTTATTGCAG GTACGTTACA GATCCCGAAA
AAAGCGGTTC GATTATTGTT AGTTACCAAT AAAGTGCTTG TCGATGGCCA GTTTGCTAAG
TCACCAGATT TACAGGTTGA TGAATTTACT CATATTGAAT GTAATGGTGT GGTGCTGCGT
CAATACCAAA AACAGTACTA TATGCTCAAT AAACCTGATG GGGTGGTGAG TGCGACCATT
GATGATAAAC ACGCTACGGC ATTAGGATTA ATAACTGGCG TCAACACTGA TATGTTACAT
ATTGCCGGTC GGTTAGATTT ACATTCTACC GGATTATTAT TGCTAACCAA CGACGCTAAG
TGGTCCGAAG CGTTAATGGA TCCGCAGCAT AAAGTCGACA AACAGTATCT GGTAACGTTA
GCTAATCCAC TAGAGCAAGA GTATGTAGAG GCATTCTCCA AAGGGATGTA TTTTGGATTT
GAGGATATCA CCACGTTACC GGCACAACTT ACGTTATTAT CGAGCCATCG AGCTCGGGTT
GTGTTGCGTG AGGGCAAGTA TCATCAAATT AAACGGATGT TTGGTCGTTT TAGAAATCCG
GTAGTAGCGT TACATCGTGA ATCTATTGGT AAAATAGTGC TTGATAAGCA ATTAGAATTG
GGTGAATTTC GTTCATTAAC AAAAGCTGAA GTTGATAGCA TTTTTCAGCA CTAG
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| Protein sequence | MVSKRGRLDQ FIAGTLQIPK KAVRLLLVTN KVLVDGQFAK SPDLQVDEFT HIECNGVVLR
QYQKQYYMLN KPDGVVSATI DDKHATALGL ITGVNTDMLH IAGRLDLHST GLLLLTNDAK
WSEALMDPQH KVDKQYLVTL ANPLEQEYVE AFSKGMYFGF EDITTLPAQL TLLSSHRARV
VLREGKYHQI KRMFGRFRNP VVALHRESIG KIVLDKQLEL GEFRSLTKAE VDSIFQH
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