| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3776 |
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| Symbol | |
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| ID | 4280669 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4493817 |
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| End bp | 4495814 |
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| Gene Length | 1998 bp |
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| Protein Length | 665 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638136589 |
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| Product | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase |
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| Protein accession | YP_752442 |
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| Protein GI | 114564928 |
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| COG category | [C] Energy production and conversion
[I] Lipid transport and metabolism |
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| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000518885 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGAAT TAAAAGAAGT TTTGGTTCCT AATATCGATA CTGATGCAGT ACAGGTTATT
GAAATTTGTG CTGCGGTTGG TGATTATCTT GAAAAAGAAG CATCAATCAT TACAGTTGAA
AGTGATAAAG CGACCATGGA CATTCCAGCA CCTTTTGCTG GTACGTTAGC AGAATTAAAA
ATCGCTGTCG GTGATACCGT TTCTGAAGGT ACCTTAATTG CTATGATGAG TGCAGCTAAC
GCTGCACCGG CTAAAGCAGA AGCTGCTGCG CCAGCACCTA AAGCTGAAGC GCCAGTGGCA
CAAGCTGCAG CTCCTGCACC AGTGACGCCT GTTGCCGCAC CAAGTGTTGG TAGCTCAGAA
GTCATTGAAG TTAAAGTACC TGATATCGGC GGCGACACTG ATGTGTCTGT CATCGAAGTA
TTGGTTGCTG TTGGCGATAG CATTGACGTT GATACGGGTT TAATTACCTT AGAAACTGAC
AAAGCAACAA TGGATGTACC ATCACCTAAA GCAGGTGTGG TTAAATCAGT GACAGTGGCC
GTTGGCGACA AAGTGTCTGA AGGTTCATTG GTTATCACGC TAGAAGTAGC CGGTTCAGCA
CCTGTTGCAT CTGCGCCACA AGCTGCCGCT CCGGTAGCAC AAGCAGCTCA GGCTCCAGCA
GCACAAGCCG CAACGACAAC TCAAGTACAA GAAATTCATG TGCCTGATAT TGGCGACGCC
AATGATGTTG ATATTATCGA AGTGCTGGTT GCTGTTGGTG ATGAAATCAC TGCAGATCAA
GGGTTAATTA CCCTTGAAAC AGACAAAGCG ACAATGGAAG TACCAGCACC ATTTGCCGGT
AAACTTGTGT CGTTAACGGT TAAAGTGGGT GATAAAGTGT CTCAAGGTAG CTTAATTGCG
ACTATTGAAA CCGCTAGCTC AGCACCAGTG GCACAAGCTG CGCCGACTCA AGCAGAGCCG
ACTCAAGCAG AGCCTGCTGC AGCGGCAGCC GCACCAACTA TGGCTGCCAA TCGTCCATCA
ACTCCACCAG TGCCGTTTCA CCCAAGTGCT GCTGTTACTG CGTCAACCGG CGTTGTTCAT
GCATCGCCTG CGGTACGTCG CTTAGCGCGT GAGTTTGGTG TTGATTTAAC CAAGGTTTCT
GGTACTGGCC GTAAAGCGCG TATTTTGAAA GAAGATGTGC AAGCGTTTGT GAAATACGAA
TTATCACGCC CTAAAGCAAC GGCTGCTACA GCGGTTTCTG GTGGTGCTGG TGGCTTAAAC
GTAATTGCAG CGCCTAAAGT TGATTTCAGT AAGTTTGGTG AAGTGGAAGA AATACCACTA
AGCCGTATCC AGAAAATATC TGGTCCTAAC TTACATCGCA ACTGGGTAAC CATTCCACAT
GTTACTCAGT TTGACGAAGC TGATATCACT GAGATGGAAG CATTCCGTAA GCAGCAGAAC
GACCTTGCTG CCAAGAAGAA AGCGGATTAC AAGATCACTC CATTAGTGTT CATGATGAAA
GCCGTCGCCA AAGCATTAGC TGAGTTCCCA GTATTTAACT CTAGTTTGAG TGCTGATGGT
GAGTCGCTTA TTCAGAAGAA GTACTTCCAC ATTGGTGTTG CTGTTGATAC ACCAAACGGC
CTAATGGTTC CGGTTGTACG TGACGTTGAT AAGAAAGGCA TTGTTGAATT GTCGCGTGAG
TTAACTGACA TTTCTATCCG TGCTCGTGAC GGTAAACTTA AGTCTGCTGA CATGCAAGGT
AGCTGTTTTA CTATTTCAAG TTTAGGTGGC ATTGGCGGTA CGGCATTTAC GCCGATTGTT
AACTACCCAG ACGTGGCGAT TTTAGGTGTA TCAAAATCTG AGATTAAGCC AAAGTGGAAC
GGTAAAGAGT TTGAACCTAA ATTAATGTTG CCGTTATCGT TGTCATATGA CCATCGCGTT
ATTGATGGCG CAATGGCTGC ACGCTTTAGT GTGACCTTGT CTGCGATACT ATCAGACATT
CGTACATTGA TTTTATAA
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| Protein sequence | MAELKEVLVP NIDTDAVQVI EICAAVGDYL EKEASIITVE SDKATMDIPA PFAGTLAELK
IAVGDTVSEG TLIAMMSAAN AAPAKAEAAA PAPKAEAPVA QAAAPAPVTP VAAPSVGSSE
VIEVKVPDIG GDTDVSVIEV LVAVGDSIDV DTGLITLETD KATMDVPSPK AGVVKSVTVA
VGDKVSEGSL VITLEVAGSA PVASAPQAAA PVAQAAQAPA AQAATTTQVQ EIHVPDIGDA
NDVDIIEVLV AVGDEITADQ GLITLETDKA TMEVPAPFAG KLVSLTVKVG DKVSQGSLIA
TIETASSAPV AQAAPTQAEP TQAEPAAAAA APTMAANRPS TPPVPFHPSA AVTASTGVVH
ASPAVRRLAR EFGVDLTKVS GTGRKARILK EDVQAFVKYE LSRPKATAAT AVSGGAGGLN
VIAAPKVDFS KFGEVEEIPL SRIQKISGPN LHRNWVTIPH VTQFDEADIT EMEAFRKQQN
DLAAKKKADY KITPLVFMMK AVAKALAEFP VFNSSLSADG ESLIQKKYFH IGVAVDTPNG
LMVPVVRDVD KKGIVELSRE LTDISIRARD GKLKSADMQG SCFTISSLGG IGGTAFTPIV
NYPDVAILGV SKSEIKPKWN GKEFEPKLML PLSLSYDHRV IDGAMAARFS VTLSAILSDI
RTLIL
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