| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1173 |
|---|
| Symbol | |
|---|
| ID | 4278441 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1381888 |
|---|
| End bp | 1383333 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638133948 |
|---|
| Product | flagellin domain-containing protein |
|---|
| Protein accession | YP_749864 |
|---|
| Protein GI | 114562351 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1344] Flagellin and related hook-associated proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000144043 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATTT CAGTAAATAC TAACGTCACG TCAATGAAAG CGCAGGGCAA TTTAAATAAA
GCTCAAAGCA ACACAGCTAC TTCAATGGAG CGTTTATCTT CAGGCTTACG CATTAACAGT
GCAAAAGATG ATGCAGCTGG TTTACAGATA TCGAATCGTA TGACCAGCCA GATTAACGGT
ATTGGCGTCG CCATGCGTAA CGCTAACGAC GGTATCTCGA TTGCGCAAAC CGCTGAAGGT
GCATTGAGTG AATCGACAAA TATTTTGCAG CGTATGCGTG ATTTATCGTT GCAATCTGCC
AACGGTTCAA ACTCTTCAAG TGATCGAGCA TCAATGCAAA CAGAAATTGA TGCATTGAGC
GAGGAATTAA CGCGTATTGC TGATACGACC GCTTTTGGTG GGCAGAAACT GTTAGACGGT
TCTTATGGTA GTCAAGCATT TCAAGTGGGC TCTGACGCAA ATCAAACAAT TAGTATTAGT
TTACGTAGTA GTGCTGCCGA AAATATCGGT GGTCAGAAAA TTACAGGTGC AGGCACAGCA
GCTGGTACGA CGGCGTTAAC CACTGGTGCA CCAGCGTTTG GCGCGGGTAC GTTAACCATT
ACCAATGATG CTACTGGCCA GGCTGGTTTA GTTTCGGCTG CTGTTACTGA CACTGCAAAC
ACTTACGCTA GTAAAATTAA TGCACTAGAA GGAACAACAG GTGTTAGCGC GCGGGCCCAT
ACTGAAATCG AGATTACTTC AGACTATGCA GCAGCCCTAA CAGGTGGCAC TATAGGCAGT
TCCCGTACTG GCGCACCTAC AACAGATATT TCTAGTGTAA CGTCAGCGCA GGGCTTAGTG
GATACAATTA ATGCTGATAG TTCGAACACA GGATTAACGG CAAAGTTAGA TGCTGAAAGT
GGCAACGTTC GTATCGCTTC GTTGGACGGA GACAATATAA CAACGACACA GGTTGGAGGC
GCGACTTTCA CCATTGATTC TGTTGTAAAT GGTGTAGCTG ATGGAGCCGC TATAGATGCT
GCAGTAGCAG CAGGTACAAC TTCATTGGGT GCGATAGAGC TAACGTCAAC AAGTTCTTTT
TCTATGGTAG AGAGTGCTGT TACGGGGGCG TTCAATGGTC TGACTTCTAG TGACGATCTT
GTAAGTTCAA TTGATATCAC CACAGCATCG GGTGCTCAAA GTGCAATATC GGCGATTGAT
GGAGCGATTG CGACGATTGA CTCACAGCGC GCAGATTTAG GTGCGGTGCA AAATCGTATG
GACTTTACCA TTAGCAATTT GAGCAATATT CAAAATAACG TTACCGATGC GCGTAGCCGT
ATTCAGGATG TTGACTTTGC TGCAGAGAGT GCAACGCTAA GTAAGCAGCA GATTCTATCG
CAAGCATCAT CGGCTATGTT GGCGCAGGCT AATCAGTTAC CGCAGGTTGC ACTATCACTA
CTATAA
|
|---|
| Protein sequence | MAISVNTNVT SMKAQGNLNK AQSNTATSME RLSSGLRINS AKDDAAGLQI SNRMTSQING
IGVAMRNAND GISIAQTAEG ALSESTNILQ RMRDLSLQSA NGSNSSSDRA SMQTEIDALS
EELTRIADTT AFGGQKLLDG SYGSQAFQVG SDANQTISIS LRSSAAENIG GQKITGAGTA
AGTTALTTGA PAFGAGTLTI TNDATGQAGL VSAAVTDTAN TYASKINALE GTTGVSARAH
TEIEITSDYA AALTGGTIGS SRTGAPTTDI SSVTSAQGLV DTINADSSNT GLTAKLDAES
GNVRIASLDG DNITTTQVGG ATFTIDSVVN GVADGAAIDA AVAAGTTSLG AIELTSTSSF
SMVESAVTGA FNGLTSSDDL VSSIDITTAS GAQSAISAID GAIATIDSQR ADLGAVQNRM
DFTISNLSNI QNNVTDARSR IQDVDFAAES ATLSKQQILS QASSAMLAQA NQLPQVALSL
L
|
|---|
| |