| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1761 |
|---|
| Symbol | |
|---|
| ID | 4277540 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2069029 |
|---|
| End bp | 2070213 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638134545 |
|---|
| Product | DegT/DnrJ/EryC1/StrS aminotransferase |
|---|
| Protein accession | YP_750449 |
|---|
| Protein GI | 114562936 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000863071 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGGTT TTGAATTATT TGGTCCTGAA GAAAAGCAGG AAGTTGCTGA CGTAATGGAG
AACGGTTTTA CCTTCCGTTA TAACTTTGAC CATATGCGTA ATGATCGCTG GAAAACCCGC
GACATGGAGC AACTACTTTG CGAAAAAATG AACGTGAAAC ACGCTCATTT AGTATCAAGC
GGTACTGCTG CATTACAAAC TGCAATGGCA GCAGCGGGCA TTGGTGCTGG CGATGAAGTC
ATTGTGCCTC CATTTACCTT TGTAGCCTCT GTTGAAGCCG TGTTTATGGC CGGTGCTGTC
CCTATTTTTG CTGAAATTGA CGAAACGTTG TGCCTATCTC CAGAAGGTAT TGAAGCTGTA
ATCACGCCAC GTACCAAGGC CATTAACCTT GTTCATATGT GTGGTTCTAT GGCCAAGATG
GACGAAATCA AAGCTGTGTG TAAAAAGCAT AACTTGGTGA TTTTAGAAGA TGCATGTCAA
GCCATCGGTG GCAGTTATAA AGGCCAAGCA TTGGGCACTA TTGGTGATGT AGGTTGTTAC
TCATTTGACT CAGTTAAAAC CATCACCTGT GGTGAAGGCG GCGCGATTGT CACTAACAAC
AGCGAAATTT ATAACCACTC ACACATGTTT TCAGATCACG GCCATGACCA TGTTGGTAAT
GATCGTGGTG CAGAATCACA CCCAATTATG GGGTTGAATT TCCGTATTTC AGAAATGAAT
GCAGCAATGG GTTTAGCACA ATTACGTAAG CTTGATAAAA TCATTGCTAT TCAACGTAAA
AATAAGAAAA CCATTAAAGA TGCAATGGCA TCTATTGCTG AAATCACCTT CCGTGAAATT
CCTGATCCAG ATGGCGATTC TGCAGGCTTC TTAACATTTA TGATGCCAAC AGAAGAACGC
ACTCAAGAAA TTAATAAAAA GCTGGCTGCC AACAAAGTTG ATGGTTGTTT TTACTGGTAT
GTTAACAACT GGCATTACCT TAAAAATTGG AAACACATCC AAGAACTTAA AGCGCCTGCC
GCATTACCTA TTATGCTAAT CGCTGATCGC CCTGACTACA CTAAAGTGCT GACACCCAAA
TCTGACGCTA TCATGAGTCG AACGATTTCG ATGTTAATCA AGTTGTCTTG GACTGATGAG
CAAATAGCTG AACGTATTGA AAATATCAAA CGCGCTTTTG CCTAG
|
|---|
| Protein sequence | MPGFELFGPE EKQEVADVME NGFTFRYNFD HMRNDRWKTR DMEQLLCEKM NVKHAHLVSS
GTAALQTAMA AAGIGAGDEV IVPPFTFVAS VEAVFMAGAV PIFAEIDETL CLSPEGIEAV
ITPRTKAINL VHMCGSMAKM DEIKAVCKKH NLVILEDACQ AIGGSYKGQA LGTIGDVGCY
SFDSVKTITC GEGGAIVTNN SEIYNHSHMF SDHGHDHVGN DRGAESHPIM GLNFRISEMN
AAMGLAQLRK LDKIIAIQRK NKKTIKDAMA SIAEITFREI PDPDGDSAGF LTFMMPTEER
TQEINKKLAA NKVDGCFYWY VNNWHYLKNW KHIQELKAPA ALPIMLIADR PDYTKVLTPK
SDAIMSRTIS MLIKLSWTDE QIAERIENIK RAFA
|
|---|
| |