Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0454 |
Symbol | |
ID | 4278152 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 519783 |
End bp | 520745 |
Gene Length | 963 bp |
Protein Length | 320 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638133212 |
Product | putative TIM-barrel protein, nifR3 family protein |
Protein accession | YP_749154 |
Protein GI | 114561641 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000230608 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAATTG GCCCGTATCA ACTGTCTAAT CAGCTGATTG TGGCACCAAT GGCAGGTGTC ACCGATCAGG CCTTCCGAAA TCTCTGTTTA CGCTATGGCG CAGCTTTAGC CGTATCAGAA ATGCTTTCAT CGAATCCCGA CGTTTGGGAC AGCGACAAAA GCCGCCAGCG CATGATGCAT TCTGGTGAAG AAGGTATACG CTCCGTACAA ATAGCAGGTG CAGATCCTGA TTTAATGGCT AATGCCGCTA AGTTCAACGT TGAACAAGGT GCGCACATCA TTGATATCAA TATGGGCTGC CCAGCAAAGA AAGTGAATAA AAAATTTGCT GGTTCTGCGT TAATGCAAAG CCCCAGCTTA GTAAAAGAGA TTTTACAAGC AGTGGTTGCT GCAGTAGATG TGCCAGTAAC GTTAAAGATA CGCACAGGTT GGGAGCCTGA ACATCGTAAT GGTGTTGAAA TAGCCCAAAT TGCTGAAGAT TGTGGCATTG TCTCGCTCGC CGTTCACGGC CGAACCAGAC AATGCATGTA CAAAGGCTTT GCCGAGTACG ACACCATTAA AGCAATTAAA CAGAATGTCT CAATTCCTGT TGTCGCTAAC GGGGACATCG ACACACCAGA GAAAGCCAAG TTTGTACTTG ACTACACTGG CGCCGATGCC CTGATGATAG GAAGAGGTGC ACAAGGACGG CCTTGGATTT TTAAAGAAAT CCTACATTAT CTGGAAACAG GTAAAAAGTT AGCGCCAATT AAGGCAGAAG AGCAACGCAG TGTGATGCTT GAACACCTTA AGAAACTTTA TGACTTATAT GGCGAATACA AAGGTGTCCG ATTTGCTAGA AAGCATGTCG GGTGGTACCT AAACCATGAG GAACAGCGCC AATTTCGTGC TGACTTCAAT CGGCTTGAAA CCGCTGCCCA GCAACATTCC CTCGTAGAAT GTTATTTTGA TGAATTAGTT TAG
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Protein sequence | MQIGPYQLSN QLIVAPMAGV TDQAFRNLCL RYGAALAVSE MLSSNPDVWD SDKSRQRMMH SGEEGIRSVQ IAGADPDLMA NAAKFNVEQG AHIIDINMGC PAKKVNKKFA GSALMQSPSL VKEILQAVVA AVDVPVTLKI RTGWEPEHRN GVEIAQIAED CGIVSLAVHG RTRQCMYKGF AEYDTIKAIK QNVSIPVVAN GDIDTPEKAK FVLDYTGADA LMIGRGAQGR PWIFKEILHY LETGKKLAPI KAEEQRSVML EHLKKLYDLY GEYKGVRFAR KHVGWYLNHE EQRQFRADFN RLETAAQQHS LVECYFDELV
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