| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0651 |
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| Symbol | |
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| ID | 4278172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 755881 |
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| End bp | 757221 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133408 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_749349 |
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| Protein GI | 114561836 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000388571 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTGTTA AGCCAAATAC TCCCTTATCC TTATTTTCAT TGACCTGGCC ATTGTTCGTC
GACTTTGCTT TGCACTTTTT AACAGCAGCA ATTAATACTT TTATGATAAG TCATGTGTCG
TATCAGGGAG TGGCGGCGTT GTCTGTAGGT AACATGGTGT TTGAGCTAGC GATTACGTTA
TTTAGTTTCG TTAGTATTGG CGCTAGTGTT GTCATTACCC AGTATTTAGG CGCCAATAAT
AAAACTGCAG CCAGTGCCGT GGTGTATTCA TCTATCGGAT TCAATTTCTT AGTTGGCTTG
GTCGCAGCGG TAGGTATTTT AACCGGCTCA ACCATGATGT TGAATTTAAT GAACTTACCA
GCCGAGCTTA TGGCCGATGG TAAATTGTAC TTACAAATTG TCGGTTTATG TTTAATTCCT
GAAGCAATGG CCATGTGCTT AGCGGCGGGA ATGCGTGCTC ATGGTTTTAC CCAGCAAGCC
ATGTGGGTAA CATTATCGAT GAATGTGATC ACCTTTATCG GCAACTTATT ATTACTCTAT
GGTTGGTTTG GTTTGCCACA AATGGGTGTA GCAGGTGTCG CTATTAGTAC TGTTGTCGGG
CGACTAGTGG GTGTGAGCAT TATGATGGTG TTGTTTGTAC GCTATACCAA AATACCATTA
CATATTCCGA GTATTTTGCG TCCAGATAAA GCCATGCTGA AAAAAGTGTT TCACATTGGC
TTGCCTGCAG CGGGTGAAAA CGTCTCATGG ATGCTGCAAT TTATGGTAGT CACTTCATTT
GTTGGCTTAA TGGGTGATAA GGCCTTAGCG GCGCAGTCAT TATATTTTCA GATTTGTATG
TTTATCTTAT TGTTTGGCCT GTCGATAGGC ATTGGTAACG AAATTATTAT TGGCCATATG
GTGGGGGCTA AGCAATTAAA AGCCGCAGAG CACCAAATGT ATCGCGCATT AAAGTTGGGT
TTGATTGTGA CCAGTATTGT GGCTTTATTC GTTGCAATAT GGGGACCTAA TCTTGTCGGT
CTGTTTACGG ATGAACAGGA CATTATTGTC CTTGTGGGGC AATTATTTGT GCTCACGTTA
GTTATGGAAC CCGGTAGAAC CTTTAACTTA GTGGTGATTA ATGCACTAAG AGCTAGTGGA
GATGCCAAGT TCCCATTTTT TATGGGCTTA TTCTCAATGT GGTGTATTGC GGTGCCTGGT
GCTTATTATC TCGGGATCCA CTTAGAGTTT GGTTTGCTGG GCATTTGGGC CGCTTTAGCG
CTTGATGAAT GGGTTAGAGG GTTGGCGATG TTGTGGCGTT GGCGCAGTGG CCGTTGGCAA
TCTAAGAGCC TTGTAGCTTA G
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| Protein sequence | MLVKPNTPLS LFSLTWPLFV DFALHFLTAA INTFMISHVS YQGVAALSVG NMVFELAITL
FSFVSIGASV VITQYLGANN KTAASAVVYS SIGFNFLVGL VAAVGILTGS TMMLNLMNLP
AELMADGKLY LQIVGLCLIP EAMAMCLAAG MRAHGFTQQA MWVTLSMNVI TFIGNLLLLY
GWFGLPQMGV AGVAISTVVG RLVGVSIMMV LFVRYTKIPL HIPSILRPDK AMLKKVFHIG
LPAAGENVSW MLQFMVVTSF VGLMGDKALA AQSLYFQICM FILLFGLSIG IGNEIIIGHM
VGAKQLKAAE HQMYRALKLG LIVTSIVALF VAIWGPNLVG LFTDEQDIIV LVGQLFVLTL
VMEPGRTFNL VVINALRASG DAKFPFFMGL FSMWCIAVPG AYYLGIHLEF GLLGIWAALA
LDEWVRGLAM LWRWRSGRWQ SKSLVA
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