Gene Sfri_2010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2010 
Symbol 
ID4278922 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2383411 
End bp2384838 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content43% 
IMG OID638134797 
Productcbb3-type cytochrome c oxidase subunit I 
Protein accessionYP_750694 
Protein GI114563181 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3278] Cbb3-type cytochrome oxidase, subunit 1 
TIGRFAM ID[TIGR00780] cytochrome c oxidase, cbb3-type, subunit I 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000523358 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAACC ATTCCCAGTC TACAGGCGCT GATTACAACT ACACTATTGT CCGCCAATTC 
GCACTAACCA CAGTTTTGTG GGGAATCGTT GGTATGTCAG TGGGTGTATT GATTGCGGCT
CAGTTAATCT GGCCACAACT GAACTTCGAC ACTCCTTGGT TAACGTATAG TCGTTTACGA
CCATTACACA CCAATGCGGT GATATTCGCG TTCGGAACAT CAGCTCTTTT CGCTACATCC
TACTATGTTG TGCAACGCAC TTGTCAAATC CGTCTCTTTG CGCCCAAATT GGCCGCATTT
ACGTTCTGGG GTTGGCAAGC CGTTATTATT GCAGCTGCTA TCACTTTACC AATGGGCTTT
ACCCAAGGCA AAGAATATGC AGAACTAGAA TGGCCTATCG ATATCGCGAT TGCGATTATT
TGGGTTAGCT ATGCAATTGT ATTCTTTGGC ACAATCGCTA AACGAACGAC ATCCCACATT
TATGTGGCAA ACTGGTTCTT TGGTGCCTTT ATCATTACTG TTGCAGTACT TCACATTGTT
AACTCAATGG CAGTACCAGT AAGCTTATTT AAGTCTTACT CTCTGTACTC CGGTGCAGTC
GATGCGATGG TTCAGTGGTG GTACGGTCAT AATGCGGTAG GCTTCTTACT TACTGCTGGT
TTCTTGGGGA TGATGTATTA CTTCGTGCCT AAGCAAGCTG GTCGTCCAGT GTATTCATAC
CGTTTATCAA TTGTCCATTT TTGGGCGTTG ATTGCGTTAT ACATTTGGGC TGGTCCTCAC
CACTTACATT ACACTGCCCT TCCTGACTGG ACTCAGTCAT TAGGCATGGT AATGTCATTA
ATTCTATTCG CACCATCTTG GGGCGGTATG ATTAACGGTA TTATGACCTT GTCTGGTGCG
TGGCATAAGC TGCGTACGGA CCCTGTATTA CGTTTCTTAG TTGTTTCATT GTCTTTCTAC
GGTATGTCTA CCTTCGAAGG CCCAATGATG GCAATCAAAA CAGTTAATGC TTTATCTCAT
TATACTGACT GGACTATTGG TCACGTTCAC TCTGGCGCGC TAGGCTGGGT TGCAATGGTG
TCTATTGGTT CTTTATATCA CTTAATTCCA GTGCTATTTG GTCATGGTCG TATGTACAGC
ATGAAGCTGG TTAACGTCCA TTTCTGGTTA GCGACTATCG GTACTGTTTT ATATATCGTG
AGTATGTGGA TTTCTGGTGT TATGCAAGGT CTTATGTGGC GTGCGGTTAA CTCTGATGGA
ACACTAACGT ATAGTTTCGT TGAGAGTTTA GAAGCCTCGT ACCCATTCTA CTTTGTACGC
TTTATTGGTG GTTGTTTCTT CTTAACCGGT ATGTTTATTA TGGCCTATAA CGTTATCCGT
ACCGTTAAAG CGTCTAAAGA TTCATTACCT GCTATTGCAG AAGCTTAA
 
Protein sequence
MMNHSQSTGA DYNYTIVRQF ALTTVLWGIV GMSVGVLIAA QLIWPQLNFD TPWLTYSRLR 
PLHTNAVIFA FGTSALFATS YYVVQRTCQI RLFAPKLAAF TFWGWQAVII AAAITLPMGF
TQGKEYAELE WPIDIAIAII WVSYAIVFFG TIAKRTTSHI YVANWFFGAF IITVAVLHIV
NSMAVPVSLF KSYSLYSGAV DAMVQWWYGH NAVGFLLTAG FLGMMYYFVP KQAGRPVYSY
RLSIVHFWAL IALYIWAGPH HLHYTALPDW TQSLGMVMSL ILFAPSWGGM INGIMTLSGA
WHKLRTDPVL RFLVVSLSFY GMSTFEGPMM AIKTVNALSH YTDWTIGHVH SGALGWVAMV
SIGSLYHLIP VLFGHGRMYS MKLVNVHFWL ATIGTVLYIV SMWISGVMQG LMWRAVNSDG
TLTYSFVESL EASYPFYFVR FIGGCFFLTG MFIMAYNVIR TVKASKDSLP AIAEA