Gene Sfri_1865 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1865 
Symbol 
ID4278325 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp2205104 
End bp2206201 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content39% 
IMG OID638134648 
ProductNlpB/DapX family lipoprotein 
Protein accessionYP_750551 
Protein GI114563038 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3317] Uncharacterized lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones1 
Plasmid unclonability p-value0.0000000807402 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAAAGA AAGTCACTCC GTTACTCCTT GTTGCAGCTG TTTCAGCTTG CAGTACGCCA 
TTAGATCGCC GTCAGGCCAA TGGTAATGAT GATTTCGTTA ATGCTGAAAC AACGCCATTA 
TTGACGATCC CACAGGGCTT GAATACGCCT ACTTACAGCA AAGAATATGA CATTCCTGTT 
GTAGGTAATA ACGTAAATAA GCAGCTTGTA GGCAAGAATC TTGATATTCG TGCGCCATTA 
CAAGTATTGC CAATGGCTGA AGGCACACAC ATCGAAGAAA GCAGTGATAG TATTCGTGTC 
GTGATTGAAT CGATTGAAAG CACTACTGAT TTAAAACAAG AAATCTTTGA TGTCATCAAT 
GGCTATCTAA ACAAAAATAA TATAGCTGTT CGTAGCGAAG ACCTTACCGC TGGCTTTATT 
GAAACTGATT GGATTGAAAA TGATGAAATC ATCGAATCTA ATTGGTGGGG CAGTGACAAA 
GTTTATCAAC TACGTCAACG TTACCGTTAC CAAGTGGACG TGAAGCCACA TGGTCGCTCT 
GGTTCTGTGT CAATTGATTT AGTTGAGCAT CAAGAGTTTT ACGATGATAA AGATCAAAAA 
ATCTTATTAA GCGGTGAAGA CAAACGTCGT TACACCACTG ATATGCTTAA CAATGCTATT 
GCTTATATGA GCATTAAACG TGATCAAGCT ATCCGTGCTG CACGTATTGA GCAAAGCCTT 
GGTATTAAAG TTGATTTAGT GACTAATGCT ACTGAATCTG CTTATTGGTT GGCCGAGGCA 
AATTATAAGT CGGTATGGGA GCGTTTACGC TTAGTATTAC CGGAAATGGG TTTTGATGTT 
GTTGATACTG ATAACAGCAA AGGCCTGTTT TATATTAATT TAGAAGAAAG CGGTGGTTTC 
TGGAGCTCTT TGTGGAGCGA AGAAAAGTTG TCATTGAAAA AAGGCAATTA TCGTTTACTG 
CTTAAAGAAA CTGATGATGT TAATCAGACT AAAATATTGT TACATGATGT AGAAGACAAG 
CCACTATCGG ATGAGTCTAT TACCGAAGTG TACAAAATTA TCTCTGACTT AATGCAAGAA 
GACCGTAAAG TTCGCTAA
 
Protein sequence
MLKKVTPLLL VAAVSACSTP LDRRQANGND DFVNAETTPL LTIPQGLNTP TYSKEYDIPV 
VGNNVNKQLV GKNLDIRAPL QVLPMAEGTH IEESSDSIRV VIESIESTTD LKQEIFDVIN 
GYLNKNNIAV RSEDLTAGFI ETDWIENDEI IESNWWGSDK VYQLRQRYRY QVDVKPHGRS 
GSVSIDLVEH QEFYDDKDQK ILLSGEDKRR YTTDMLNNAI AYMSIKRDQA IRAARIEQSL 
GIKVDLVTNA TESAYWLAEA NYKSVWERLR LVLPEMGFDV VDTDNSKGLF YINLEESGGF 
WSSLWSEEKL SLKKGNYRLL LKETDDVNQT KILLHDVEDK PLSDESITEV YKIISDLMQE 
DRKVR