| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2160 |
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| Symbol | |
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| ID | 4279072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2573958 |
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| End bp | 2576351 |
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| Gene Length | 2394 bp |
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| Protein Length | 797 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638134950 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_750844 |
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| Protein GI | 114563331 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00475664 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATAAAA GTCTCGTATC TTTGGCCGTT ATTGCCAGTA TTTCAGCCCC TGTAGCAATC
GCTGCAGAGG AAGGTAAAAA CCTAGAGCGT ATTCAGGTAA TTGGCTCGCG TATCGCCCTT
CGTACCGCCA CAGACAGTGC AACTCCTGTC GATATTATTA CCTCAGAACA ACTTGAAGCG
ACAGGTATAA CTGAAACTGC CAAGGCATTG CAGTTTGCGG CTCCAAGCTA CAGCTTTCCA
TTTTCGTCCA TTACCGATGG AAGTGACGCG GTTCGCCCTG CAAGTTTGCG AGGCATGTCA
CCTGATCACA CTTTAGTGTT GGTTAATGGT AAGCGTCGCC ATGGTTCTGC ATTGGTTCAC
TTAGCCGGCA CGTTAGGCAA AGGTTCATCA AACGTTGACC TTAATGCCAT TCCAATGACA
TCCATTAAGC GAATTGAAAT TTTACGTGAC GGTGCGTCAG CGCTATACGG ATCTGATGCG
ATTGCAGGTG TAATCAACGT CGTACTTAAA GACAGCGACG AAGGTGGCAG CATTGTCGCT
CAAGTTGGCC AAACTTACGA AGGCGACGGT GAGCAAGTAC GTGTTGGCAT TAATCAAGGC
TTTAGTTTTA GCCAAGACGG CTTTGTGAAT GTGTCTTTGG AAGCACATCA GAAAAATTCA
ACTAACCGTG CAGGTCTCGA TCCACGTCAG CAATACCCAA CGCTAGCAGA CGGCAGCCCA
GATCCACGCG AAGCCACATT CAATCGTAAA AACCATCATG TTGGCGACAG TGATTATGAC
AACTACGGTT TATTTTTGAA TGCTCAGCAA GGCTTCGATA CAAAGGGTAA GCTTTATGCC
TTTGGTGGTA TTAGCAAACG CAGCTCAACT TCAGGCGCTT TTTATCGTCG TGCGTTAGAT
TCTCGTAATG TTATTGAAGT GTATCCTGAC GGGTTTTTAC CACAAATAAG CCCAGAAATT
ATTGATTACT CCTTGGTAAC AGGTTATGAG TTTGAGCTGG GCCAGTGGGA AATCGATTCT
TCTGTTGGTT TTGGTAGCAA TAGCTTTGAA TACAATGTAG AAAACAGCAT TAACGCTTCG
CTTGGTCCTA ACAGCCCAAC AAGCTTTGAT GCTGGAACAT TATCAACCAG TGAGCTAAAT
CTTAATTTAG ATGCTTCAAC CTACTACGAT TTTGCCAATG ACTCTGACTT ACTCGTGGCA
ATGGGTATCA CATGGCGCGA AAGTGGCTAT CAAATTGAAG CTGGCCAAGA AGAATCGTAT
ATCCAAGGCG ATTACCAAGA TAAATCGGGT GGTAGTCAGG GATTTGGTGG TTTTACTAAA
GAGTCTGAAG TAGATGAAGA CCGTACAAAC CTTGGTTTGT ATATCGAACT TGAAAACCAA
CTCACCGATG ACTTTTATTG GGCGGCTGCC GTTCGTTATG AAGACTATTC AGATTTTGGT
AGCAATACCA GTTGGAAATT GTCCGGTCGT TATGAGCTAA CAGACAGTGT GGCACTTCGT
TTAACCACCG ATACAGGTTT CCGCGCCCCA AGTGTGCAAC AGCTTTATTT TACCAACGTA
TCAACTTTCT TTGATCCAGA CCCAGATACT GGTGAGTTTA TTCCTAGAGA GTCAGGTACT
TTTAACCAGT TATCACCGGT TAGAGCTGAG CTGGGTATTC CTGATCTTAA AGCGGAAGTA
TCACACTCTT ATAGTGCAGG TATTGTTTAC ACTGGCGACA ATGGCTTTGC AGTGACATTA
GATGCATATG AAATCAATGT TGATGACAGA ATCATTTTGT CAGGTTCTAT CGACAAAGAA
AGCTCCCCCG CCATTGCTGC CATTCTTGAA GGCACCAATG CAGACTCAGC GCGTTTCTTT
ATGAATGCGG TTGATACTAA AACCCAAGGT GTAGACTTAG TTATCACTCA AGGTTTTGAT
CTCGGTGAAT ATGGCGACCT AAAAGCAAAC CTTGCTTACT CATACAAAGA AACTGAAATT
GAGTCAATTT CTTTGCCTTC GATCCTCAAC GGATTAGAAG ACGAACTATT TGATAATATT
GAAGTCGTTC GCATGACGGA AGCTAATCCG AAAAATACCG CTAACATCGG TTTTACTCAT
CAATATGATG ACTTCACCAC TAACTTACGT TTCAGTTATT TCGGTGAATA TACCGTGGGT
TATTCATCTA GTGAAGTGGA ATATGGTGCA AGATGGACCA CAGATTTAAG TACTCGCTAC
CGTGCAACAG ATAATCTTGC TGTTACGTTA GGGGTACAAA ACCTGTTTGA TACTTATCCA
GAGAAACGCC CTGAGGATAA TAATTTTAAC GGCATATTTG TATACCCACT GACTAATACT
CCATTTGGTT TTAACGGTGG CTACTATTAC TTAGATCTAC GCTACACCTA CTAA
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| Protein sequence | MYKSLVSLAV IASISAPVAI AAEEGKNLER IQVIGSRIAL RTATDSATPV DIITSEQLEA
TGITETAKAL QFAAPSYSFP FSSITDGSDA VRPASLRGMS PDHTLVLVNG KRRHGSALVH
LAGTLGKGSS NVDLNAIPMT SIKRIEILRD GASALYGSDA IAGVINVVLK DSDEGGSIVA
QVGQTYEGDG EQVRVGINQG FSFSQDGFVN VSLEAHQKNS TNRAGLDPRQ QYPTLADGSP
DPREATFNRK NHHVGDSDYD NYGLFLNAQQ GFDTKGKLYA FGGISKRSST SGAFYRRALD
SRNVIEVYPD GFLPQISPEI IDYSLVTGYE FELGQWEIDS SVGFGSNSFE YNVENSINAS
LGPNSPTSFD AGTLSTSELN LNLDASTYYD FANDSDLLVA MGITWRESGY QIEAGQEESY
IQGDYQDKSG GSQGFGGFTK ESEVDEDRTN LGLYIELENQ LTDDFYWAAA VRYEDYSDFG
SNTSWKLSGR YELTDSVALR LTTDTGFRAP SVQQLYFTNV STFFDPDPDT GEFIPRESGT
FNQLSPVRAE LGIPDLKAEV SHSYSAGIVY TGDNGFAVTL DAYEINVDDR IILSGSIDKE
SSPAIAAILE GTNADSARFF MNAVDTKTQG VDLVITQGFD LGEYGDLKAN LAYSYKETEI
ESISLPSILN GLEDELFDNI EVVRMTEANP KNTANIGFTH QYDDFTTNLR FSYFGEYTVG
YSSSEVEYGA RWTTDLSTRY RATDNLAVTL GVQNLFDTYP EKRPEDNNFN GIFVYPLTNT
PFGFNGGYYY LDLRYTY
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