| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1482 |
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| Symbol | |
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| ID | 4278049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1771278 |
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| End bp | 1772132 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638134263 |
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| Product | transcriptional regulator, LysR family protein |
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| Protein accession | YP_750172 |
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| Protein GI | 114562659 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000799068 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATACAG ATTTATTAAA AACATTCTTA GAAGTGTCCC GAACTCGGCA CTTTGGTAAG
GCGGCTGAAA ATCTATACCT CACTCGAAGT GCTGTCAGTT TTAGGATAAA GCAGTTAGAA
AATATTTTGG GTTTAGAGTT ATTTGAACGC TTACGTAACA ATATTCAACC AACACCTGCA
GGTGAAAGAA TGCTCGGCCA TGCTGAGGCA GTGCTTAATG CTTGGGAAAG GGCAAAACAA
GATATTATTT TAAATCAGCA ACACAGTGCT CAGTTAGCGT TGTCGGCTGG CGATAATATT
TGGGATGCTT TTTTACAAGG TTTCTTGCAG CCATTACATT TAGGCTTAGA AGGGGTGGCT
TTAAGAACTG ATGTATTACC TGCAACGGTG ATGACTCGCC AACTTATTGA ACGAACTTTA
GATATTGCGA TTACTTTTGA CCCTCCAAAG CTTGATGGAG TCATATTAGT TAAGCTTGCT
GAAGTAAAAT TGTATTTAGT ATCCAAACAA GCAGGCGTTA AGCTTACACA AACACCTACT
TTACCTTATA TAAAAGTAGA CTGGGGTACC GCCTTTAATA TCACTCATGC CCAAGATTTT
ACCATGTTGC CTTTGCCGGT ATTACACACA AGTTCTGCTC GTATGGCATT GGACTTTATA
CTTAATAATG GTGGATGTGC ATTTTTGCCT GAAGCACTTA TAAAGCCTTA TTTAGATAAC
GGGAGCTTAT ATGTCGTGGA TGATGCAAAA TGTATCCATA GACATGTGTA TGCTGCATAT
TGGGCTGAAA ATGAAAGACT TGCTTATATT GAACAAGCCA TTTCAATTCT GACAACCGAT
AAGCGCACTG AATGA
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| Protein sequence | MDTDLLKTFL EVSRTRHFGK AAENLYLTRS AVSFRIKQLE NILGLELFER LRNNIQPTPA
GERMLGHAEA VLNAWERAKQ DIILNQQHSA QLALSAGDNI WDAFLQGFLQ PLHLGLEGVA
LRTDVLPATV MTRQLIERTL DIAITFDPPK LDGVILVKLA EVKLYLVSKQ AGVKLTQTPT
LPYIKVDWGT AFNITHAQDF TMLPLPVLHT SSARMALDFI LNNGGCAFLP EALIKPYLDN
GSLYVVDDAK CIHRHVYAAY WAENERLAYI EQAISILTTD KRTE
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