| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1030 |
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| Symbol | |
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| ID | 4277844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1213058 |
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| End bp | 1214155 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133798 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_749721 |
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| Protein GI | 114562208 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000101532 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGTATTT ACATGATCAA CAAACTTGGC CAATGTCTTT TTTCAACTAC CGTATTGATG
ATGGGATATA TTGGGTTTAT TCCCAATGGT ATTGCCACGC CCACACCTCC CCGCGCAGAA
AAAGTGGTTC CGGTCATCAC CGCCACCGTT GAACAGCATG AACTTTCGCA ATCAATTACC
TTAATCGGAA AACTGGCTGC TACTCACTCG GTAATGATAG CGCCACAAGT CGCAGGCAAA
ATAGATAGCA TAGCGGTCAC ATCCAACCAA TATGTCAATA AAGGCCAGGC TCTGCTGACG
CTTGATAACC GCAAAGCTAA AGCCAGCGTG ACCGAAGCTC AAGCTTATTA TCAAGATGAA
GTGCGTAAGC TTAATGAGTT TAACAAGTTG ATTCACGTTA ACGCCATCAC TCAAACAGAA
ATAGAAGCTC AAAAGTCCAG TGTTGATATC GCTTTCGCTC GACTTGAATC AGCCAAAACA
GACCTTGATT ACCATACTCT AGCCGCGCCA TTTTCCGGAA ATACTGGTTT GGTTAACTTC
AGCCGAGGCA AGATGGTCAG TATCAATGAG TCACTATTAA CACTTGATGA TTTATCGGTG
TTACAGCTCG ATTTACAAGT TCCAGAACAT TATCTCTCTT TGTTAAGTAC AGGGATGTCG
GTAAACGCTT CCAGCAGAGC ATGGAATAAA ACCATTTTCA CTGGCAAGAT TATCGCTATT
GATCCACGCG TCAATTCACA AACACTTAAC CTCAATATTC GCAGTCAGTT TGATAATCAA
AAGGGTCAAT TAAAGCCCGG TATGATGATG TCAGCAACAC TGGTATTTCC CAGCGTGTCT
TCTCCTATTG TTCCGGTACA AGCACTTGAA TATTCTGGTA CCAAACGTTA TGTCTACGTA
ATCAACCAGG ACAACATCGC CACACGCACC GAAGTGATGT TAGGGGCCAG AATTGACGAT
CAAGTGTTAC TCGAATCTGG CATTAACATC GGCGACCACA TCGTCGTCCA GGGGCTGGTA
AATATGCGTG ACGGTGTCAA AGTAAAAGAC GTAGCTAAGC AAAATAAAAC AAGCCCTGTT
AAACAGGAGC AACAATAA
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| Protein sequence | MCIYMINKLG QCLFSTTVLM MGYIGFIPNG IATPTPPRAE KVVPVITATV EQHELSQSIT
LIGKLAATHS VMIAPQVAGK IDSIAVTSNQ YVNKGQALLT LDNRKAKASV TEAQAYYQDE
VRKLNEFNKL IHVNAITQTE IEAQKSSVDI AFARLESAKT DLDYHTLAAP FSGNTGLVNF
SRGKMVSINE SLLTLDDLSV LQLDLQVPEH YLSLLSTGMS VNASSRAWNK TIFTGKIIAI
DPRVNSQTLN LNIRSQFDNQ KGQLKPGMMM SATLVFPSVS SPIVPVQALE YSGTKRYVYV
INQDNIATRT EVMLGARIDD QVLLESGINI GDHIVVQGLV NMRDGVKVKD VAKQNKTSPV
KQEQQ
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