| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0700 |
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| Symbol | |
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| ID | 4278743 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 826095 |
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| End bp | 826565 |
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| Gene Length | 471 bp |
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| Protein Length | 156 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638133464 |
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| Product | rRNA large subunit methyltransferase |
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| Protein accession | YP_749396 |
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| Protein GI | 114561883 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1576] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00246] rRNA large subunit m3Psi methyltransferase RlmH |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000000637083 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGTTAC AGCTTATTGC CGTTGGCACC AAAATGCCCG ATTGGGTAAC TCGAGGCTTC
GAAGAATACC AACGCCGTTT CCCTAGAGAT ATGGCTTTGG AGCTCATCGA AATCCCAGCA
GGGAAACGCG GGAAAAATGC TGATATCGCC CGAATCTTAC ATAAGGAAGG CGAATTAATG
CTAGCGGCAG TAGCAAAAGG TAACCACATT GTCAGTTTAG ATTTACCCGG TAAAAACTGG
ACAACACCAG AACTTGCCGA GCAAATGACA AAGTGGCAAC TCGATGGTAG AGATGTCAGC
TTACTTATTG GTGGCCCAGA AGGACTTTCA CCTGCTTGTA AAGAGGCGGC CAACCAAAGC
TGGTGTTTAT CAGCCCTCAC TTTACCCCAT CCTTTGGTTA GGGTTATTGT GGCAGAAAGC
CTATATCGAG CTTGGAGCGT CAATACCAAT CATCCGTATC ACAGAGAATA A
|
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| Protein sequence | MKLQLIAVGT KMPDWVTRGF EEYQRRFPRD MALELIEIPA GKRGKNADIA RILHKEGELM
LAAVAKGNHI VSLDLPGKNW TTPELAEQMT KWQLDGRDVS LLIGGPEGLS PACKEAANQS
WCLSALTLPH PLVRVIVAES LYRAWSVNTN HPYHRE
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